View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_68 (Length: 448)
Name: NF0846_low_68
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 34 - 435
Target Start/End: Complemental strand, 32989983 - 32989582
Alignment:
| Q |
34 |
caaacggaacacctcaatgctccgtctgacaggaaaacaccccttcaactcagagccaccacttcaagaactagtagaacatggtttcattacacctgtc |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32989983 |
caaacggaacacctcaatgctccgtctgacaggaaaacaccccttcaactcagagccaccacttcaagaactagtagaacatggttttattacacctgtc |
32989884 |
T |
|
| Q |
134 |
ccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagtatcaggtttggtcaaaaacccgacccaattca |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32989883 |
ccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagtatcaggtctggtcaaaaacccgacccaattca |
32989784 |
T |
|
| Q |
234 |
cgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaaccggcgcaaggaacagaacatgataaaacaaag |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32989783 |
cgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaaccggcgcaaggaacagaacatgataaaacaaag |
32989684 |
T |
|
| Q |
334 |
cattggtttcaactggggtgcagctggtatctccacttcagtatggcgcggtgtaccattgtgcaccgtgcttaagagttgtggcatcttgaaccgcaac |
433 |
Q |
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| T |
32989683 |
cattggtttcaactggggtgcagctggtatctccacttcagtatggcgtggtgtaccactgtgcaccgtactcaagagttgtggcatcttgaaccgtaac |
32989584 |
T |
|
| Q |
434 |
ag |
435 |
Q |
| |
|
|| |
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|
| T |
32989583 |
ag |
32989582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 417
Target Start/End: Complemental strand, 32962220 - 32961937
Alignment:
| Q |
134 |
ccactccactatgtccgtaaccacggacctgtcccaaaagcacaatgggatagttggaccatcgaagtatcaggtttggtcaaaaacccgacccaattca |
233 |
Q |
| |
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|||||||||||||| ||||| ||||||| ||| || |||||| |||||| |||| ||||||||||| | ||| |||| |||||||| | |||| |
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| T |
32962220 |
ccactccactatgttcgtaatcacggacatgttcccaaagcatgttgggatgattggtccatcgaagtaactggtctggtaaaaaacccagcatgtttca |
32962121 |
T |
|
| Q |
234 |
cgatggcccaactaatcgacgacttcccaagtcatgaattccctgttacccttgtatgcgcgggtaaccggcgcaaggaacagaacatgataaaacaaag |
333 |
Q |
| |
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|||||| |||||| ||| ||||||||||||| | |||||| ||||| || ||||| ||| | | || || |||||||| ||||| ||| | || || | |
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| T |
32962120 |
cgatggaccaactcatcaacgacttcccaagccgtgaatttcctgtcacgcttgtttgctccgcgaatcgtcgcaaggagcagaatatggtgaagcagac |
32962021 |
T |
|
| Q |
334 |
cattggtttcaactggggtgcagctggtatctccacttcagtatggcgcggtgtaccattgtgcaccgtgcttaagagttgtgg |
417 |
Q |
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||||| || ||||||||| | ||| || |||||||||||||||||| |||||||||||| | |||||||| ||| ||||||| |
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| T |
32962020 |
tattggatttaactggggtccgtctgctacctccacttcagtatggcgtggtgtaccattgagaaccgtgctcaagcgttgtgg |
32961937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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