View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_69 (Length: 444)
Name: NF0846_low_69
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 96 - 436
Target Start/End: Original strand, 46847309 - 46847649
Alignment:
| Q |
96 |
acattttataaatattgttgcattccgggtggaacttatcaccgacaaggaattcatgaacatcaccatcaatctctatagaggtgcaaccgggaacttt |
195 |
Q |
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| T |
46847309 |
acattttataaatattgttgcattccgggtggaacttatcaccgacaaggaactcatgaacatcaccatcaatctctatagaggtgcaaccgggaacttt |
46847408 |
T |
|
| Q |
196 |
cttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctcctgcatatatatttgacagaagcacaaatgcccctgca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847409 |
cttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctcctgcatatatatttgacagaagcacaaatgcccctgca |
46847508 |
T |
|
| Q |
296 |
ttttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatgaaccttacaagcactaagaagagaaccccaaatagctc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46847509 |
ttttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatgagccttacaagcactaagaagagaaccccaaatagctc |
46847608 |
T |
|
| Q |
396 |
catccggctccatttccatatttttcataagaatctctgct |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847609 |
catccggctccatttccatatttttcataagaatctctgct |
46847649 |
T |
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