View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_7 (Length: 710)
Name: NF0846_low_7
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 96 - 699
Target Start/End: Original strand, 323268 - 323880
Alignment:
| Q |
96 |
ggaataccttttgaggaagacatgtatttgttgggacatagcgtcctccttttccttggctttttcagcctgttagttagttgatgaaaaatgtttagac |
195 |
Q |
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| T |
323268 |
ggaataccttttgaggaagccatgtatttgttgggacatagcgtcctccatttccttggctttttcagcctgttagttagttgatgaaaaatgtttagac |
323367 |
T |
|
| Q |
196 |
ttagacttgagaatatgaagaagttatttaaatgaaaagcaa-cctgacctaacctcaattattgcatgatccctttcagcaaaggcagtagctacacag |
294 |
Q |
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| T |
323368 |
tt-gacttgagaataagaagaagttatttaaatgaaaagaaaacctgacctaacctcaattattgcatgatccctttcagaaaaagcagtagctacacag |
323466 |
T |
|
| Q |
295 |
ccctggaaaaacttaagctgcttctgggcttcgatattctttgaaagctcggcagagtgtagatctgcgagttgagctttaattctgtaagcctgagaaa |
394 |
Q |
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| T |
323467 |
ccctggaaaaatttaagctgcttctcggcttcgatattctttgaaagctcggcagcgtgtagatctgcgagttgagctttaattctgtaagcctgagaaa |
323566 |
T |
|
| Q |
395 |
gttggtcttgtagattaagagtatcagttgtagaggcagccaacttattttgaagggtttgaatctcctgctccaatccagctgt---------atgcat |
485 |
Q |
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| T |
323567 |
gttggtcttgtagattaagagtatcagttgtagaggcagccaacttattttgaagggtttgaatctcctgctccaatccagctgttctttgaaaatgcat |
323666 |
T |
|
| Q |
486 |
tcgtgtagcgacactaagatacgcaggtcctgcttgttgcatacatagctgttcgatatctttgcgtaattcatcacgctctacaatnnnnnnnnnnnna |
585 |
Q |
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| T |
323667 |
tcgtgtagcgacactaagatacgcaggtcctgcttgttgcatacatagctgttcgatatctttgcgtaattcatcacgctctacaat--cacacacacaa |
323764 |
T |
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| Q |
586 |
tatatgactatgactttaacaattgaagaaatcaaatgaa--ggaattaagatacatacatacataccgtgttcgagttgtcggatacgacccaataacg |
683 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| | ||| ||| | | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
323765 |
tatatgactatgactttaacaattgaagaaatgaaatgaaatgaaatgaaggaattaagatacataccgtgttcgagttgtcggatacgacccaataacg |
323864 |
T |
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| Q |
684 |
attcatgatgattcat |
699 |
Q |
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| T |
323865 |
attcatgatgattcat |
323880 |
T |
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