View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_70 (Length: 444)
Name: NF0846_low_70
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_70 |
 | |
|
| [»] chr1 (7 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 37 - 444
Target Start/End: Original strand, 35207146 - 35207553
Alignment:
| Q |
37 |
cagagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccg |
136 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35207146 |
cagagagagcgagatagagagcctttttggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcagaaggaagaaaacgattcta |
35207245 |
T |
|
| Q |
137 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
236 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35207246 |
gacatcatcagaatcggcggcagatcaaaaaatcttagaaaggatggagaatctttcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
35207345 |
T |
|
| Q |
237 |
tcttcaggcaattcttcaaaacgtgtcattttttggttctttaccggtgacatttagcatacacaaatgatagatatcacaaatcgcagctcactaatgt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35207346 |
tcttcaggcaattcttcaaaacgtgtcattttttggttctttaccggtgacatttagcatacacaaatgatagatatcacaaatcgccgctcactaatgt |
35207445 |
T |
|
| Q |
337 |
tattacaccattggttttaaccttaaatatgaagactcaacaattatttttctttcatttaccccaattatattttctataatttaaattctagtctacc |
436 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35207446 |
tattacaccattggttttaactttaaatatgaagactcaacaattatttttctttcatttaccccaattatattttctataatttaaattctagtctacc |
35207545 |
T |
|
| Q |
437 |
aagtgcat |
444 |
Q |
| |
|
|||||||| |
|
|
| T |
35207546 |
aagtgcat |
35207553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 37 - 271
Target Start/End: Original strand, 35214352 - 35214586
Alignment:
| Q |
37 |
cagagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccg |
136 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||| | |||||| |||| ||| |||||| |||||| |
|
|
| T |
35214352 |
cagaaagagcgtgatagagagcctttttggttggaatgttggagagtgcaggagattgtgagaggatagatgagatgtcagaagggagaaaatgattcca |
35214451 |
T |
|
| Q |
137 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
236 |
Q |
| |
|
|||||||||| ||| ||||| | |||||||| ||||||||| || ||||||||| |||| || ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
35214452 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagaaaggacggagaatctaccaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
35214551 |
T |
|
| Q |
237 |
tcttcaggcaattcttcaaaacgtgtcattttttg |
271 |
Q |
| |
|
||||||||||||| ||||| | ||||||| |||| |
|
|
| T |
35214552 |
ccttcaggcaattcatcaaaccttgtcattctttg |
35214586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 35146193 - 35145975
Alignment:
| Q |
40 |
agagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccggac |
139 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| | ||| || |||| ||| ||||||| ||||| ||| |
|
|
| T |
35146193 |
agagagcgagatagagagcctttttggttggaatgttggcaagggaaggacgttgtgagaggatagatgatatgtcagaagggagaaaacaattccagac |
35146094 |
T |
|
| Q |
140 |
atcatcaaaattggcggaagatcgaaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacactct |
239 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||| || |||||||| ||| || |||||||||||||||||| |||||||| | |||||| || |
|
|
| T |
35146093 |
atcatcagaatcggcggcagatcgaaaagtcttagaatggacggagaatccaccaatgtcaatcggagtcgtgcgagagtgtatggtggcgatacaccct |
35145994 |
T |
|
| Q |
240 |
tcaggcaattcttcaaaac |
258 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
35145993 |
tcagacaattcttcaaaac |
35145975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 35145745 - 35145965
Alignment:
| Q |
38 |
agagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccgg |
137 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| ||||||| ||| | ||| || |||| ||| ||||||| ||||| |
|
|
| T |
35145745 |
agagagagcaagatagagagcctttttgggtggaatgttggcaagtaaaggagactgtgagatgatagatgatatttcagaagggagaaaacaattccaa |
35145844 |
T |
|
| Q |
138 |
acatcatcaaaattggcggaagatcg-aaaagtcttagaaaagatggagaatctgtcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
236 |
Q |
| |
|
||||||||| ||| ||||| |||||| |||||||||||||| || | |||||||| |||| || ||| || ||||| |||||||||||| | |||||||| |
|
|
| T |
35145845 |
acatcatcagaatcggcggcagatcgaaaaagtcttagaaaggacgaagaatctgccaacgtcaatcagattcgtgggagagagtatggcggcaatacac |
35145944 |
T |
|
| Q |
237 |
tcttcaggcaattcttcaaaa |
257 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35145945 |
ccttcaggcaattcttcaaaa |
35145965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 35265558 - 35265661
Alignment:
| Q |
37 |
cagagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccg |
136 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||| ||||||| || | |||||| |||| ||| ||||| |||||| |
|
|
| T |
35265558 |
cagagagagcgagatacagagcttttttggtaggagcgttggcaagtgaaggagagtgtgagatgacagatgagatgtcagaaggtagaaattgattcca |
35265657 |
T |
|
| Q |
137 |
gaca |
140 |
Q |
| |
|
|||| |
|
|
| T |
35265658 |
gaca |
35265661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 35273087 - 35273230
Alignment:
| Q |
37 |
cagagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgagaggatgggtgagatatcaggaggaagaaaacgattccg |
136 |
Q |
| |
|
|||| ||||| ||||||||| ||||| |||| |||||||||| ||| |||||||| ||||||| || | |||||| |||| ||| ||||| |||||| |
|
|
| T |
35273087 |
cagatagagcaagatagagatcctttttggtaggaatgttggtaagggaaggagagtgtgagataatagatgagatgtcagaaggtagaaattgattcca |
35273186 |
T |
|
| Q |
137 |
gacatcatcaaaattggcggaagatcgaaaagtcttagaaaaga |
180 |
Q |
| |
|
||| |||| ||| || || ||||| |||||||||||||||| |
|
|
| T |
35273187 |
tacagcatcggaatcggaggctgatcggaaagtcttagaaaaga |
35273230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 35249985 - 35250038
Alignment:
| Q |
204 |
ggagtcgtgcgagagagtatggtgacaatacactcttcaggcaattcttcaaaa |
257 |
Q |
| |
|
|||||||| ||||||||||||| | |||| |||||||| |||||||| |||||| |
|
|
| T |
35249985 |
ggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaaa |
35250038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 898709 - 898649
Alignment:
| Q |
39 |
gagagagcgagatagagagcctttatggttggaatgttggcaagtgaaggagattgtgaga |
99 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||| ||||||||| |||||||| ||||||| |
|
|
| T |
898709 |
gagagagcgagatagagggcctttttggtgggagcgttggcaagggaaggagaatgtgaga |
898649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9 times since January 2019
Visitors: 6046