View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_74 (Length: 430)
Name: NF0846_low_74
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Original strand, 39213951 - 39214311
Alignment:
| Q |
15 |
tatatccaattcatataaacaaaagtttgaagtttgaaaaatgatttcattagtactgtttttaaagattttatttagcaactaaatcggttgcaacaaa |
114 |
Q |
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| T |
39213951 |
tatatccgattcatataaacaaaagtttgaagtttgaaaaatgatttcattagtactatttttaaagattttatttagcaactaaatcggttgcaacaaa |
39214050 |
T |
|
| Q |
115 |
gaaagaaataaaggacattccatttccacaattcaaatagaattagtgaaagataaacagatttagctaaatgatacgcgtcaacattagtggttctatt |
214 |
Q |
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| T |
39214051 |
gaaagaaataaaggacattccatttccacaattcaaatagaattagtgaaagataaacagatttagctaaatgatacgcgtcaacattagtggttctatt |
39214150 |
T |
|
| Q |
215 |
gacatgatttagcatacaaaaatgacaacaactaattatgtgaccattaacaaaccaaagtaagaataatctttgagttgccatgcatccctctaatcac |
314 |
Q |
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| T |
39214151 |
gacatgatttagcatacaaaaatgacaacaactaattatgtgaccattaacaaaccaaagtaagaataatctttgagttgccatgcatccctctaatcac |
39214250 |
T |
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| Q |
315 |
attaagagaatatcctccatattcatcaaccgaccagatggctacccctaataaacacaaa |
375 |
Q |
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| T |
39214251 |
attaagagaatatcctccatattcatcaaccgaccagatggctactgctaataaacacaaa |
39214311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 424
Target Start/End: Original strand, 15239310 - 15239352
Alignment:
| Q |
382 |
gctgttgccggagaagcactcaaaacaaacatcacaacattag |
424 |
Q |
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| T |
15239310 |
gctgttgccggagaagcactcaaaacaaacatcacaacattag |
15239352 |
T |
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