View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_75 (Length: 430)
Name: NF0846_low_75
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 29 - 418
Target Start/End: Complemental strand, 42083524 - 42083135
Alignment:
| Q |
29 |
acttaccatgatgtggattcaagtgtgaaggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaac |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083524 |
acttaccatgatgtggattcaagtgtgaaggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaac |
42083425 |
T |
|
| Q |
129 |
ctacaatgaaacttgaagttgttactcctgaagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttagtgagaa |
228 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42083424 |
ctacaatgaaacttgaagttgttactcctgaagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttggtgagaa |
42083325 |
T |
|
| Q |
229 |
accagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgctt |
328 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42083324 |
accagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgcagcaccgatgctt |
42083225 |
T |
|
| Q |
329 |
catattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctc |
418 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42083224 |
catattaaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgatgtcaatgtctc |
42083135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 42087040 - 42086665
Alignment:
| Q |
30 |
cttaccatgatgtggattcaagtgtgaaggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacc |
129 |
Q |
| |
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||||||||||||| |||||||||||| ||| ||||||||||||||||| ||||||| ||||||||| ||||||||| ||| |||||||||||| |
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| T |
42087040 |
cttaccatgatgtagattcaagtgtgttggctttccagttggcagcaagaggagcttttcgggaaggaataagaaaagccggaccgagaatgcttgaacc |
42086941 |
T |
|
| Q |
130 |
tacaatgaaacttgaagttgttactcctgaagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttagtgagaaa |
229 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||| | ||||||||||||||||| ||| || |||| ||| |
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| T |
42086940 |
tataatgaaagttgaagttgttactcctgaagaacatttaggagatgtaattggtgatctcaactcaagaagaggccaaatcaatagttttggtgacaaa |
42086841 |
T |
|
| Q |
230 |
ccagataaactctacgtaagtcacaaaaccttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgcttc |
329 |
Q |
| |
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|||| | |||| | ||||||||||||||| | || ||||||| ||| |||||||||| ||| | || ||||||||||||||||||| ||| |||| |
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|
| T |
42086840 |
ccaggtggactcaaggtaagtcacaaaaccctttc-tccatgtgcatatattaaatttgaaggt----atgatttgaaagctatgtagca-cgacacttc |
42086747 |
T |
|
| Q |
330 |
atattcaagaaagacgtatctggtgtccgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
415 |
Q |
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||||| || |||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||| |||| | ||||||||| |
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| T |
42086746 |
atatt----aatgacgtatctggtgtccaatacttgtagttacattcaatttcatccatttttaaaattgttattgatgtcaatgt |
42086665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 29242409 - 29242508
Alignment:
| Q |
31 |
ttaccatgatgtggattcaagtgtgaaggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacct |
130 |
Q |
| |
|
||||||||||||||||||||||||| ||| || |||||||||||||| | || |||| |||||||| ||||||||| ||| ||||||||||||| |
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| T |
29242409 |
ttaccatgatgtggattcaagtgtgttggc-tttcagttggcagcaagacgagtttttcaagaaggaataagaaaagccggaccgaaaatgcttgaacct |
29242507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
353 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
404 |
Q |
| |
|
|||||||||| || |||||||||||| || |||||||||||||||||||||| |
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|
| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
364 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
364 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
410 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||| ||||| |
|
|
| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 415
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
364 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
415 |
Q |
| |
|
||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
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| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 6933194 - 6933145
Alignment:
| Q |
366 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
415 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| |||| |||| |
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|
| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgt |
6933145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
359 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
404 |
Q |
| |
|
|||| |||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
368 |
gttacattcaatttcttccatttttcaaattattatc |
404 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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