View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_76 (Length: 428)
Name: NF0846_low_76
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 77 - 422
Target Start/End: Complemental strand, 4948083 - 4947714
Alignment:
| Q |
77 |
gctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggt |
176 |
Q |
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| T |
4948083 |
gctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatataaatattgcaattgatattcaggtttaacttatctaggt |
4947984 |
T |
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| Q |
177 |
taagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacatta-------------ctcacaactataaaattt |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4947983 |
taagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagtagaacattactcacaaacattactcacaactataaaattt |
4947884 |
T |
|
| Q |
264 |
aaattatnnnnnnnnttagatacc-----------taatttgatcatagaaaatgatcaataaaaacaatttttagtttctgagtaaagaaaatggaaca |
352 |
Q |
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| T |
4947883 |
aaattataaattttttttgatcccgagttgatccctaatttgatcatagaaaatgatcaataaaaacaatttttagtttctgagaaaagaaaatggaaca |
4947784 |
T |
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| Q |
353 |
atttaatcccgagnnnnnnnatgtctactctttgggtccgagaaataaaagctgtcctatttcttttctc |
422 |
Q |
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| T |
4947783 |
atttaatccctagtttttttatgtctattctttgggtccgagaaataaaagctgtcctatttcttttctc |
4947714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 15239352 - 15239310
Alignment:
| Q |
30 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaacagc |
72 |
Q |
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| T |
15239352 |
ctaatgttgtgatgtttgttttgagtgcttctccggcaacagc |
15239310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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