View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_8 (Length: 689)
Name: NF0846_low_8
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 30 - 572
Target Start/End: Original strand, 28062460 - 28063007
Alignment:
| Q |
30 |
cttcaagtgcagtctgttctctctcatccatggcactctctagcaccttttgcaacttcaacactactcaaaccctaaggcaaaacatcgttgtttcatg |
129 |
Q |
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| T |
28062460 |
cttcaagtgcagtctgttctctctcatccatggcactctctagcaccttttgcaacttcaacactactcaaaccctaaggcaaaacattgttgtttcatg |
28062559 |
T |
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| Q |
130 |
ttttcctcagtttcatctctctcataagcataagaatgtcaagggtcaccaaatcaaacgaaggttctcactcatttctctaatttgtattcatattatg |
229 |
Q |
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| T |
28062560 |
ttttcctcagtttcatctctctcataagcataagaatgtcaagggtcaccaaatcaaacgaaggttctcactcatttctctaatttgtattcatatcatg |
28062659 |
T |
|
| Q |
230 |
catgtccatctcatattaatttatattttccctatctttaagagagcttatattaaggagtggagagttagcaaccattggtgccctctccaacttgagg |
329 |
Q |
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| T |
28062660 |
catgtccatctcatattaatttatattttctctatctttaagagagcttatattgaagagtggagagttagcaaccattggtgccctcttcaacttgagg |
28062759 |
T |
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| Q |
330 |
tatgtaattataatgatacaatattgatcatagattaaatgatcttgtagcatataatatttgagtttctttctatat----tttttaattttgcattca |
425 |
Q |
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| T |
28062760 |
tatgtaattacaatgatacaatattgatcatagactaaataatcttttagcatataatatttgagtttttttctatatattttttttaatattgt-ttca |
28062858 |
T |
|
| Q |
426 |
tgttgtttatgtatgtccnnnnnnnttatgtggtgaagtttgattacgtgctcgttttgcttcgtagaagtgatttcttgctcttcacggaaaaattaga |
525 |
Q |
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| T |
28062859 |
tgttgtttatatatgtccaaaaaaaatatgtggtgaagtttgattacgtgctcgttttgcttagtagaagtgatttcttgctcttcacggaaaaattaga |
28062958 |
T |
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| Q |
526 |
caaag--ttttgtttggttactaaaattagagcaagtttaactttaaga |
572 |
Q |
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| ||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28062959 |
ctaagttttttgtttggttactaaaattagagtaagtttaactttaaga |
28063007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 637 - 681
Target Start/End: Original strand, 28063072 - 28063116
Alignment:
| Q |
637 |
ggtgcagtggtaaaaagccagcatatcttggagtacagaataatc |
681 |
Q |
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| T |
28063072 |
ggtgcagtggtaaaaagccagcatatcttggagtacagaataatc |
28063116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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