View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_83 (Length: 398)

Name: NF0846_low_83
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_83
NF0846_low_83
[»] chr7 (1 HSPs)
chr7 (286-388)||(31301584-31301686)
[»] scaffold0273 (1 HSPs)
scaffold0273 (82-142)||(5808-5868)
[»] chr2 (3 HSPs)
chr2 (86-143)||(18430808-18430865)
chr2 (85-142)||(18702914-18702971)
chr2 (98-142)||(19115259-19115303)
[»] chr3 (2 HSPs)
chr3 (86-142)||(26417601-26417657)
chr3 (85-139)||(12968490-12968544)
[»] chr4 (2 HSPs)
chr4 (96-142)||(17540569-17540615)
chr4 (86-142)||(41114649-41114705)
[»] scaffold0040 (1 HSPs)
scaffold0040 (82-142)||(1390-1450)
[»] chr8 (1 HSPs)
chr8 (86-131)||(26833222-26833267)
[»] chr6 (1 HSPs)
chr6 (95-136)||(25930682-25930723)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 286 - 388
Target Start/End: Original strand, 31301584 - 31301686
Alignment:
Q  286 ctggtggtggaggtgtaacgtatgtagacggcatcattgttgtatcttgttccttccttgccgcaagttctttgtgcattttgcatatactcgtcgagaa 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31301584 ctggtggtggaggtgtaacgtatgtagacggcatcattgttgtatcttgttccttccttgccgcgagttctttgtgcattttgcatatactcgtcgagaa 31301683  T
Q  386 taa 388  Q
    |||    
T  31301684 taa 31301686  T

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Target: scaffold0273 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 5868 - 5808
Alignment:
Q  82 gacatcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  5868 gacatcatcagaagctctgaagatcatcaggagttgaagatcatcagaagctgaaagaatt 5808  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 18430808 - 18430865
Alignment:
Q  86 tcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatta 143  Q
    |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  18430808 tcatcagaggttctgaagatcatcaagagctgaagatcatcagaagctgaaagaatta 18430865  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 18702971 - 18702914
Alignment:
Q  85 atcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    ||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  18702971 atcatcagaggttctaaagatcatcaggagttgaagatcatcagaagctgaaagaatt 18702914  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 19115303 - 19115259
Alignment:
Q  98 ctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||    
T  19115303 ctgaagatcatcaggtgctgaagatcatcagaagctgaaagaatt 19115259  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 26417601 - 26417657
Alignment:
Q  86 tcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||    
T  26417601 tcatcagaggttctgaagatcatcaggagttgaagatcatcagaagctgaaagaatt 26417657  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 12968544 - 12968490
Alignment:
Q  85 atcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaaga 139  Q
    ||||||||| |||||||||||||| ||||||||| || |||||||||||||||||    
T  12968544 atcatcagaggttctgaagatcatcaggagctgaggaccatcagaagctgaaaga 12968490  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 17540615 - 17540569
Alignment:
Q  96 ttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  17540615 ttctgaagatcattaggagctgaagatcatcagaagttgaaagaatt 17540569  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 41114649 - 41114705
Alignment:
Q  86 tcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    |||| ||||| ||| |||||||| |||||||||||||||||||||||||| ||||||    
T  41114649 tcataagaagatctaaagatcatcaggagctgaagatcatcagaagctgagagaatt 41114705  T

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Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 1390 - 1450
Alignment:
Q  82 gacatcatcagaagttctgaagatcattaggagctgaagatcatcagaagctgaaagaatt 142  Q
    |||||||| ||||| | |||||||||| |||||||||||||||||||||||||| ||||||    
T  1390 gacatcattagaagatttgaagatcatcaggagctgaagatcatcagaagctgagagaatt 1450  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 26833267 - 26833222
Alignment:
Q  86 tcatcagaagttctgaagatcattaggagctgaagatcatcagaag 131  Q
    |||||||| |||||||||||||| || || ||||||||||||||||    
T  26833267 tcatcagaggttctgaagatcatcagaagttgaagatcatcagaag 26833222  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 25930723 - 25930682
Alignment:
Q  95 gttctgaagatcattaggagctgaagatcatcagaagctgaa 136  Q
    |||||||||||||| || ||||||||||||||||||| ||||    
T  25930723 gttctgaagatcatcagaagctgaagatcatcagaagttgaa 25930682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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