View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_84 (Length: 398)
Name: NF0846_low_84
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_84 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 53041224 - 53040846
Alignment:
| Q |
9 |
acaatgcaatacactattttcaacttgtacaggatactctttttgtccggctcccttgagagctgggtccaaatctctcacagaaatgcccatattgttc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53041224 |
acaatgcaatacactattttcaacttgtacaggatactctttttgtccggctcccttgagagctgggtccaaatctctcacagaaatgcccatattattc |
53041125 |
T |
|
| Q |
109 |
ttctattgtttggtctttcacgatctaccttgagtctagcaaagaattgccctgaaaggaagccaccggtcatataatctcaatcatgaaaactaagctt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53041124 |
ttctattgtttggtctttcacgatctagcttgagtctagcaaagaattgccctgaaaggaagccaccagtcatataatctcaatcatgaaaactaagctt |
53041025 |
T |
|
| Q |
209 |
tgaatagtctatagccgtcaatgatatttgcttcaattatctttttccatgcaggaaaatttggctaatgagcaaacataatttgtaaagaataaaaatc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53041024 |
tgaatagtctatagtcgtcaatgatatttgcttcaattatctttttccatgcaggaaaatttggctaatgagcaaacataatttgtaaagaataaaaatc |
53040925 |
T |
|
| Q |
309 |
aatttataggatgatacagagggtgaacattattaattgatccttcagcatacaaaaattgatagtaaaagatagaatt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53040924 |
aatttataggatgatacagagggtgaacattattaattgatccttcagcatacaaaaattgataataaaagatagaatt |
53040846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 226 times since January 2019
Visitors: 6046