View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0846_low_85 (Length: 397)
Name: NF0846_low_85
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 27 - 382
Target Start/End: Original strand, 14597475 - 14597830
Alignment:
| Q |
27 |
ctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597475 |
ctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
14597574 |
T |
|
| Q |
127 |
gtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttg |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597575 |
gtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttg |
14597674 |
T |
|
| Q |
227 |
tccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597675 |
tccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcag |
14597774 |
T |
|
| Q |
327 |
atgctctaactaatgcattcatggcaccagctttcttgttgtgatcataacctggc |
382 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14597775 |
atgctcgaactagtgcattcatggcaccagctttcttgttgtgatcataacctggc |
14597830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 14611026 - 14610675
Alignment:
| Q |
31 |
gggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtca |
130 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
|
|
| T |
14611026 |
gggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctcatgttcccgtca |
14610927 |
T |
|
| Q |
131 |
aagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtcca |
230 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14610926 |
aagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgccacctttgtcca |
14610827 |
T |
|
| Q |
231 |
gcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgc |
330 |
Q |
| |
|
|||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||| |
|
|
| T |
14610826 |
tcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgataggactgcagatgc |
14610727 |
T |
|
| Q |
331 |
tctaactaatgcattcatggcaccagctttcttgttgtgatcataacctggc |
382 |
Q |
| |
|
|| ||| | ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
14610726 |
tcgaacaagtgcattcatggcaccggctttcttgttatgatcataacctggc |
14610675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 381
Target Start/End: Original strand, 29917837 - 29918186
Alignment:
| Q |
32 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaa |
131 |
Q |
| |
|
||||| ||||| ||||| | ||||||| ||||||| || |||||||| ||||| | ||| |||||||| ||||| |||||||||||||| | |||| |
|
|
| T |
29917837 |
ggaggatcaaaaccataaagagcaaaccttctaaacagacagccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaa |
29917936 |
T |
|
| Q |
132 |
agaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccag |
231 |
Q |
| |
|
|||| || ||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || | |||||| | | || ||||| |||| |
|
|
| T |
29917937 |
agaagacggtgttgtgattagcatatctatcagagggatcaataccctcaaacctttgagggaattggacatagcagaggcgatcaccaccacgatccat |
29918036 |
T |
|
| Q |
232 |
catgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgct |
331 |
Q |
| |
|
||| |||||||||||||| | | ||| || | || || |||||||||||||| || || || || || || || || || |||| || || || ||| |
|
|
| T |
29918037 |
cataaagcacataccttccctcattgctttggagttgtatatatagtgatcacagtcgaggttaagtataaagggaccgttggacatgacagccgaggct |
29918136 |
T |
|
| Q |
332 |
ctaactaatgcattcatggcaccagctttcttgttgtgatcataacctgg |
381 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
29918137 |
ctaaccaatgcattcatggccccagcttttttgttgtgatcgtaacctgg |
29918186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 392
Target Start/End: Complemental strand, 44634492 - 44634168
Alignment:
| Q |
68 |
atgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagg |
167 |
Q |
| |
|
||||| || ||||| ||||| | ||||||||| | |||||| || ||||||||| | | |||||||| || |||||||| || ||||| ||||| || |
|
|
| T |
44634492 |
atgcagccagttccaacatacattggaccttgtaaaccatcaagagctctcatgctcacatcaaagaacacggtgttgtggtttgcatatcgatcactgg |
44634393 |
T |
|
| Q |
168 |
gatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaatt |
267 |
Q |
| |
|
| |||||||||||||| ||||| ||||| |||| ||| ||||| || |||||| |||| ||||| |||||||||||||| | | ||| | || |
|
|
| T |
44634392 |
ggtcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaaggagtt |
44634293 |
T |
|
| Q |
268 |
atagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttg |
367 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |||||||||||| |||| || ||| | || ||| | ||||||||||| ||||||||||||||| |
|
|
| T |
44634292 |
gtagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttg |
44634193 |
T |
|
| Q |
368 |
tgatcataacctggcttcatctcac |
392 |
Q |
| |
|
|||||||| || ||| || |||||| |
|
|
| T |
44634192 |
tgatcatatcccggcctcttctcac |
44634168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 379
Target Start/End: Complemental strand, 47919349 - 47919046
Alignment:
| Q |
76 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaata |
175 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||| |||||||||||||| | |||||||| |||||||||||||| ||||| | ||| |||||||||||| |
|
|
| T |
47919349 |
ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcatatctatcagagggatcaata |
47919250 |
T |
|
| Q |
176 |
ccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatat |
275 |
Q |
| |
|
|| ||||| || |||||||| || | |||||| | | || ||||| |||| ||| |||||||||||||| | | ||| || | || || |||| |
|
|
| T |
47919249 |
ccctcaaacctctgggggaattggacatagcagaggcgatccccaccacgatccatcataaagcacataccttccctcattgctttggagttgtaaatat |
47919150 |
T |
|
| Q |
276 |
agtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcata |
375 |
Q |
| |
|
|||||||||| || |||||||| || || || || || |||| || || || ||||| || |||||||||| || |||||||| ||||||||||| || |
|
|
| T |
47919149 |
agtgatcacagtcgagattgagtataaaaggaccgttggacatgacagctgaagctctgaccaatgcattcactgccccagcttttttgttgtgatcgta |
47919050 |
T |
|
| Q |
376 |
acct |
379 |
Q |
| |
|
|||| |
|
|
| T |
47919049 |
acct |
47919046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 41490529 - 41490666
Alignment:
| Q |
70 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
169 |
Q |
| |
|
||||||||| || ||||| | ||||| |||| ||||||||| |||| ||| || | |||||||| |||||||||||||||||||| ||||| || || |
|
|
| T |
41490529 |
gcatccggtaccaacatatacaggaccctgaataccatcgagagctcgcatattgacatcaaagaagacagtgttgtgattggcataccgatctgatggg |
41490628 |
T |
|
| Q |
170 |
tcaataccttcaaatctttgggggaactgaatatagca |
207 |
Q |
| |
|
||||| ||||||||||||||||| || |||| |||||| |
|
|
| T |
41490629 |
tcaattccttcaaatctttggggaaattgaacatagca |
41490666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 375
Target Start/End: Original strand, 12193221 - 12193526
Alignment:
| Q |
70 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
169 |
Q |
| |
|
|||||| || || ||||||| ||||| |||| ||||||||| |||||||| || | |||||||| |||||||| ||||||||||| ||||| || || |
|
|
| T |
12193221 |
gcatccagtaccaacataaacaggaccctgaataccatcgagagctctcatattgacatcaaagaagacagtgttatgattggcataccgatctgatggg |
12193320 |
T |
|
| Q |
170 |
tcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattat |
269 |
Q |
| |
|
|| || |||||||| ||||| || || |||| ||||| || | || ||| | ||||| ||| ||||||||||||| | | ||||| | | |||| |
|
|
| T |
12193321 |
tcgattccttcaaacctttgaggaaattgaacatagctgatcttgtccccatcgcggtccatcatatagcacataccttccctgattgcctcagagttat |
12193420 |
T |
|
| Q |
270 |
agatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtg |
369 |
Q |
| |
|
| || || || ||||| |||||||| || ||||| || ||||| |||| | || || |||| ||| || ||||||||||| || |||||||| ||||| |
|
|
| T |
12193421 |
atatgtaatggtcacagtcaagattaagtatgaaaggaccattagacattacggctgaagctcgaaccaaggcattcatggcccccgctttcttattgtg |
12193520 |
T |
|
| Q |
370 |
atcata |
375 |
Q |
| |
|
|||||| |
|
|
| T |
12193521 |
atcata |
12193526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 15418526 - 15418587
Alignment:
| Q |
125 |
ccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatct |
186 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15418526 |
ccgtcaaagaagactgtgttatgatttgcatatcgatccgagggatcaatcccttcaaatct |
15418587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 15418044 - 15418138
Alignment:
| Q |
32 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
126 |
Q |
| |
|
||||| ||||||||||| | |||| | | |||||||||||| |||||||| ||||| | ||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
15418044 |
ggaggttcaaatccatagagtgcatatctcctaaacatgcaaccggttccgacatacattggaccttgtagaccatccaatgctctcatatttcc |
15418138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 951 times since January 2019
Visitors: 6039