View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_94 (Length: 382)
Name: NF0846_low_94
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_94 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 78 - 382
Target Start/End: Original strand, 160888 - 161192
Alignment:
| Q |
78 |
tcaaggtcccaaacatttcactgatctgataaggnnnnnnnaccttccagctgatttaggaaagagtggttgttctcatattttcccaagaacagtaaca |
177 |
Q |
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| T |
160888 |
tcaaggtcccaaacatttcactgatctgataaggtttttttaccttccagctgatttaggaaagagtgattgttctcatattttcccaagaacagtaaca |
160987 |
T |
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| Q |
178 |
aagttaatggattctggtgtgagttttgagaaagttgtggggagaagattactagacataacatttgagaagaaaccatttctaagtaattttctctgct |
277 |
Q |
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| T |
160988 |
aagttaatggattctggtgtgagttttgagaaagttgtggggagaagattactagacataacatttgagaagaaaccatttctaagtaattttctctgct |
161087 |
T |
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| Q |
278 |
taggttgtttaccttcattttcatgtttgaatcatttcaaagcgcgtcttaggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaa |
377 |
Q |
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| T |
161088 |
taggttgtttaccttcatttttatgtttgaatcatttcaaagcgcgtcttaggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaa |
161187 |
T |
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| Q |
378 |
cctca |
382 |
Q |
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| T |
161188 |
cctca |
161192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 128 - 382
Target Start/End: Original strand, 152461 - 152715
Alignment:
| Q |
128 |
ctgatttaggaaagagtggttgttctcatattttcccaagaacagtaacaaagttaatggattctggtgtgagttttgagaaagttgtggggagaagatt |
227 |
Q |
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| T |
152461 |
ctgatttagaaaagagtggtagttctcatacttttccaagaacagtaacaaagttaatagattctggtgtgagttttgagaaattcccggggagaagatt |
152560 |
T |
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| Q |
228 |
actagacataacatttgagaagaaaccatttctaagtaattttctctgcttaggttgtttaccttcattttcatgtttgaatcatttcaaagcgcgtctt |
327 |
Q |
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| T |
152561 |
actagacataaaatttgagaagaaacagtttctaagttattttctctgcttaggttgtttaccttctttttcatgtttgaacaatttcaaagcacgtcta |
152660 |
T |
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| Q |
328 |
aggattccgcaattgaaggttgatcacacaacagaatgtgttttaaggaacctca |
382 |
Q |
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| T |
152661 |
atgattccgcaattgaaggttgatcacacaacagaatgcgttctaaggaacctca |
152715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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