View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0846_low_97 (Length: 378)

Name: NF0846_low_97
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0846_low_97
NF0846_low_97
[»] chr8 (2 HSPs)
chr8 (13-350)||(8935280-8935617)
chr8 (45-146)||(4765208-4765307)
[»] chr3 (2 HSPs)
chr3 (17-81)||(31719630-31719694)
chr3 (43-97)||(35045596-35045650)
[»] chr2 (2 HSPs)
chr2 (34-146)||(4974303-4974415)
chr2 (34-146)||(4992211-4992323)
[»] chr1 (1 HSPs)
chr1 (10-86)||(15250467-15250543)
[»] chr5 (1 HSPs)
chr5 (44-147)||(28858811-28858911)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 8935280 - 8935617
Alignment:
Q  13 cagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935280 cagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagttt 8935379  T
Q  113 cacattaggcatatatcaatgtcgtgtatcaactggtacacctttttataaagctaaacatgtaatagtagcatgtgtttccatcatattttatgtttat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  8935380 cacattaggcatatatcaatgtcgtgtatcaactggtacacctttttataaagctaaacatgtaatagtagcatgtgcttccattatattgtatgtttat 8935479  T
Q  213 atttctcaagtctttagtcctatttttcctttgtcannnnnnnnccttggaattaatcttaacaggcagctctggaagcagcaagggttctgaatctcac 312  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935480 atttctcaagtctttagtcctatttttcctttgtcattttttttccttggaattaatcttaacaggcagctctggaagcagcaagggttctgaatctcac 8935579  T
Q  313 gagcaataaatatttctcaggaccatacggtatggact 350  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8935580 gagcaataaatatttctcaggaccatacggtatggact 8935617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 4765208 - 4765307
Alignment:
Q  45 gttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatcaa 144  Q
    ||||||| ||||||| ||||||  ||| ||||||   ||||||||| |||||| |||||||  |||||| |||||| |||| ||| |||| |||||||||    
T  4765208 gttacaaattataatttgttgt--tcagttattggttagcaatgacgtttaactgtaaatcacagtttcgcattagacatacatcgatgttgtgtatcaa 4765305  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 31719694 - 31719630
Alignment:
Q  17 gagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagc 81  Q
    ||||||||||| ||||||||||||  ||||||  | ||||||| |||||||||||||||||||||    
T  31719694 gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgttcatttattgagc 31719630  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 35045596 - 35045650
Alignment:
Q  43 tagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaac 97  Q
    ||||||| ||||||||| ||||||||||| |||||||||| |||  |||||||||    
T  35045596 tagttacgatttataatttgttgtgttcaattattgagcaacaacaacatttaac 35045650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 4974415 - 4974303
Alignment:
Q  34 aatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatg 133  Q
    ||||||| |||||||| ||||||||| ||||||||||  ||||| | |||||  ||  ||||| ||||||||||||| |  |||||| |||| || ||||    
T  4974415 aatctacgttagttacgatttataatttgttgtgttcggttatttaacagcatcgatgtttaagagtaaatcgtagtattgcattagacatacattaatg 4974316  T
Q  134 tcgtgtatcaact 146  Q
    |  ||||||||||    
T  4974315 ttatgtatcaact 4974303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 4992323 - 4992211
Alignment:
Q  34 aatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatg 133  Q
    ||||||| |||||||| ||||||||| ||||||||||  ||||| | |||||  ||  ||||| ||||||||||||| |  |||||| |||| || ||||    
T  4992323 aatctacgttagttacgatttataatttgttgtgttcggttatttaacagcatcgatgtttaagagtaaatcgtagtattgcattagacatacattaatg 4992224  T
Q  134 tcgtgtatcaact 146  Q
    |  ||||||||||    
T  4992223 ttatgtatcaact 4992211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 15250543 - 15250467
Alignment:
Q  10 gcacagagagaaatttgtggaaagaatctacattagttacaatttataatgtgttgtgttcatttattgagcagcaa 86  Q
    ||||||||||||| |||| | |||||||||| ||||||||  |||||||| |||||  || | ||||||||||||||    
T  15250543 gcacagagagaaacttgtcggaagaatctactttagttacggtttataatttgttggcttaagttattgagcagcaa 15250467  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 28858911 - 28858811
Alignment:
Q  44 agttacaatttataatgtgttgtgttcatttattgagcagcaatgacatttaacagtaaatcgtagtttcacattaggcatatatcaatgtcgtgtatca 143  Q
    |||||||||| ||||| |||| |||||||| ||| ||||||||   | ||||| | ||||||  ||| ||||||||  |||||||||||| |||||||||    
T  28858911 agttacaatt-ataatctgttatgttcattaatttagcagcaaccgcgtttaagaataaatcacagtatcacatta--catatatcaatgccgtgtatca 28858815  T
Q  144 actg 147  Q
    ||||    
T  28858814 actg 28858811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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