View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0846_low_98 (Length: 378)
Name: NF0846_low_98
Description: NF0846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0846_low_98 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 4602059 - 4601688
Alignment:
| Q |
1 |
aaatttttggaaacattgccaacaaaatcaagaatttgcaaaaacattcaagtgtaatgtacaccaaaaacatt-cta--cttgttggatttattgaggg |
97 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||| |
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| T |
4602059 |
aaatttttggaaacattgccaacaaaatcaaga-tttgcaaaaacattcaagtgtaatgtacaccaaaactctaactaagcacgttggatttattgaggg |
4601961 |
T |
|
| Q |
98 |
aagctgaatctagccgaggtcggctgagattcatcaatattatgtctctcgattgtggattctctgattgttttttatacggttgnnnnnnnnnnnnnnn |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4601960 |
aagctgaatctagccgaggtcggctgagattcatcaatattatgtctctcgattgtggattctctgattgtt----atacggttgtttttaatttttttt |
4601865 |
T |
|
| Q |
198 |
agctacactnnnnnnntgcataaataaaagcaaagagataaagggatagattgcaaaattaagcttgtttggttgattgaacgtgttaattacaattaat |
297 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4601864 |
agctaca-ttaaaagatgcataaataaaagcaaagagataaagggatagattgcaaaattaagcttgtttggttgattgaacgtgttaattacaattaat |
4601766 |
T |
|
| Q |
298 |
gatcaaagtctttataataaactatttgtctattagcaaaacgacgtaacctacaatgtgtatctcttattcaactat |
375 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4601765 |
gatcatagtctttataataaactatttgtctattagcgaaacgacgtaacctacaatgtgtatctcttattcaactat |
4601688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 25167758 - 25167678
Alignment:
| Q |
214 |
tgcataaataaaagcaaagaga-taaagggatagattgcaaaattaagcttgtttggttgattgaacgtgttaattacaat |
293 |
Q |
| |
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|||||||||||||||||| | | |||||||||| |||| ||| | ||||||||||||||||| | |||||||||||||| |
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|
| T |
25167758 |
tgcataaataaaagcaaaaaaactaaagggataaattgtgaaaattagcttgtttggttgattagatgtgttaattacaat |
25167678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 25051552 - 25051632
Alignment:
| Q |
214 |
tgcataaataaaagcaaagagataaagggataga-ttgcaaaattaagcttgtttggttgattgaacgtgttaattacaat |
293 |
Q |
| |
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|||||||||||||| | | ||||||||||||| | ||||||| |||| |||||| ||||||||| |||| ||||||||| |
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| T |
25051552 |
tgcataaataaaaggagaaagataaagggataaatttgcaaagataagtttgttttattgattgaatgtgtcaattacaat |
25051632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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