View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_high_1 (Length: 840)
Name: NF0847_high_1
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 135 - 518
Target Start/End: Original strand, 21592352 - 21592732
Alignment:
| Q |
135 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
234 |
Q |
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| T |
21592352 |
cttcccatcgagcattatcagt---aagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
21592448 |
T |
|
| Q |
235 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgcttga |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21592449 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgctcgg |
21592548 |
T |
|
| Q |
335 |
tctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaag |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592549 |
tctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttcctcctcatctgaag |
21592648 |
T |
|
| Q |
435 |
aaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcacgtattggaaatggag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
21592649 |
aaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgtgtgaagagccagaagcccgtattggaaaaggag |
21592732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 613 - 832
Target Start/End: Original strand, 21592352 - 21592568
Alignment:
| Q |
613 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
712 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21592352 |
cttcccatcgagcattatcagt---aagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggaccaatcttttggccaactt |
21592448 |
T |
|
| Q |
713 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgcttga |
812 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21592449 |
ggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcctctctatcataccatgctcgg |
21592548 |
T |
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| Q |
813 |
tctgcactgtatttcatctc |
832 |
Q |
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||||||||||||| |||||| |
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| T |
21592549 |
tctgcactgtattccatctc |
21592568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 42095475 - 42095371
Alignment:
| Q |
321 |
cataccatgcttgatctgcactgtattccatctcttgacgcatgctttcagtaatctcatacttatgttcttcacccaagtcagatttatttgctatttc |
420 |
Q |
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||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42095475 |
cataccatgctcggtctgcatcatattccatctcttgacgcatgctttcagtaatctcatacttgtgttcttcacccaagtcagatttatctgctatttc |
42095376 |
T |
|
| Q |
421 |
ctcct |
425 |
Q |
| |
|
||||| |
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|
| T |
42095375 |
ctcct |
42095371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 693 - 804
Target Start/End: Complemental strand, 42095685 - 42095574
Alignment:
| Q |
693 |
accaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcct |
792 |
Q |
| |
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|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
42095685 |
accagtcttttggccaactcggcctcctttttctgaaatgaagcctcatctccaagaaaaagtgaagagctatcagaatcaaacaatgcgctgccttcct |
42095586 |
T |
|
| Q |
793 |
ctctatcatacc |
804 |
Q |
| |
|
|||||||||||| |
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|
| T |
42095585 |
ctctatcatacc |
42095574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 42095685 - 42095574
Alignment:
| Q |
215 |
accaatcttttggccaacttggcctcttttttctgaaacgaagcctcatctccaacaaaaagtgaagagttatcaaaatcaaacaatgtacttccttcct |
314 |
Q |
| |
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|||| |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
42095685 |
accagtcttttggccaactcggcctcctttttctgaaatgaagcctcatctccaagaaaaagtgaagagctatcagaatcaaacaatgcgctgccttcct |
42095586 |
T |
|
| Q |
315 |
ctctatcatacc |
326 |
Q |
| |
|
|||||||||||| |
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|
| T |
42095585 |
ctctatcatacc |
42095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 613 - 695
Target Start/End: Complemental strand, 42096591 - 42096509
Alignment:
| Q |
613 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacc |
695 |
Q |
| |
|
|||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
42096591 |
cttcccattgagcattatccgctgtaagctgagacaatttcttgctttgagaaagggacatcttagtcccatctcttcggacc |
42096509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 42096591 - 42096509
Alignment:
| Q |
135 |
cttcccatcgagcattatcagttgtaagctgagataatttcttgctttgagaaagggacatcttagtgccatctcttcggacc |
217 |
Q |
| |
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|||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42096591 |
cttcccattgagcattatccgctgtaagctgagacaatttcttgctttgagaaagggacatcttagtcccatctcttcggacc |
42096509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 428 - 512
Target Start/End: Complemental strand, 42095259 - 42095175
Alignment:
| Q |
428 |
tctgaagaaaaagcgagtttatgcaatcttcgattatatccagcaacagaagatttgcgtgaagagccagaagcacgtattggaa |
512 |
Q |
| |
|
||||||||||| || ||||||||| | |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||| |
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| T |
42095259 |
tctgaagaaaaggcaagtttatgcgaccttcgattatatccagaaacagaagatttgactgaagagccggaagctcgtattggaa |
42095175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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