View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_high_22 (Length: 425)
Name: NF0847_high_22
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 12089595 - 12089353
Alignment:
| Q |
16 |
cccaaattagttcctaaagtaaaggatagggtcccgaagtgtggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtgagtctaaaaa |
115 |
Q |
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| T |
12089595 |
cccaaattagttcctaaagtaaaggatagggtcccgaa---tggaaaatgtatttaggagttctagaagtaatttcatgaaacaatggtgagtctaaaaa |
12089499 |
T |
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| Q |
116 |
ctaaagtagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcctctcggatga |
215 |
Q |
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| T |
12089498 |
ctaaactagttaaagggaggaacatgagataatataaagagaggtatggagaggtaaattagaatagtaaatgatggcaaaggtaaatcctttaggatga |
12089399 |
T |
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| Q |
216 |
taaggagtctaaaaataattgttggataccttagtgaaggagtaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12089398 |
taaggagtctaaaaataattgttggataccttagtgaaggagtaaa |
12089353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 256 - 422
Target Start/End: Complemental strand, 12088986 - 12088820
Alignment:
| Q |
256 |
agtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaagtaggaaa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12088986 |
agtaaaagattcaaatgaacaaggagtagaatgtaacccattaagaagaattaacggtgctaagagaagagctaagatgaatataatttaaattaggaaa |
12088887 |
T |
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| Q |
356 |
tggtgagttaaggcacaaggtaaggttagaagtaattaaaatgacggggcaaaatgttaagtttctt |
422 |
Q |
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| T |
12088886 |
tggtgagttaaggcactaggtaaggttagaagtaattaaaatgatggggcgaaatgttaagtttctt |
12088820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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