View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0847_high_24 (Length: 414)
Name: NF0847_high_24
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_high_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 124 - 400
Target Start/End: Complemental strand, 10508388 - 10508112
Alignment:
| Q |
124 |
tgtatatccttatttaaacttagaaccaccaaaagatatcataaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10508388 |
tgtatatccttatttaaacttagaaccaccaaaagatatcataaaaaaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgat |
10508289 |
T |
|
| Q |
224 |
atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctg |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
10508288 |
atgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagttttccattaggtagaatacttttagggatattgattgttgatcctcctg |
10508189 |
T |
|
| Q |
324 |
ttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctc |
400 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10508188 |
atgcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtcgaaagctc |
10508112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 128 - 406
Target Start/End: Complemental strand, 10502679 - 10502400
Alignment:
| Q |
128 |
tatccttatttaaacttagaaccaccaaaagatatcat--aaaacaatggaaaacatattttaatttaccttgatctctaatgagttttgttttcgatat |
225 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
10502679 |
tatccttaattaaactcggaatcaccaaaagatatcaacgaaaacaacgggaaa-atattttaatttaccttgatcccgaatgagatttgttttggatat |
10502581 |
T |
|
| Q |
226 |
gaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggtagaatactttcagggatattgattgttgatcctgctgtt |
325 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||| |||||| | |||||||||||||||||||||| ||||| |
|
|
| T |
10502580 |
gaaatctttgaattgaatgtactgaatttgaagagaaaatggactaaatatcccattaggtataatactattagggatattgattgttgatcctcctgtt |
10502481 |
T |
|
| Q |
326 |
gcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatagggaagtccaaagctctctgct |
406 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10502480 |
gcgaagtttgcaccatgtgtgaagttagacccaagagaattaagatatggacttagatagggaagtccaaagctctgtgct |
10502400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 186 - 399
Target Start/End: Complemental strand, 10499680 - 10499467
Alignment:
| Q |
186 |
ttaatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattagg |
285 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||| | |||||| ||||||||||||||| | ||||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
10499680 |
ttaatttaccttgatccctaatgaattttgcttttggtatgaaatctttgaattgaatggactgaatttgaagggaaaatggactaaacattccattagg |
10499581 |
T |
|
| Q |
286 |
tagaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagatag |
385 |
Q |
| |
|
|| |||||| | ||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10499580 |
tataatactattaggaattttgattgttgaccctgctgttgcaaagtttgcaccatgtgtgaaatttgaccccagagaattaagatatggacttagatag |
10499481 |
T |
|
| Q |
386 |
ggaagtccaaagct |
399 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10499480 |
ggaagtccaaagct |
10499467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 188 - 406
Target Start/End: Complemental strand, 10485300 - 10485082
Alignment:
| Q |
188 |
aatttaccttgatctctaatgagttttgttttcgatatgaactctttgaattgaatgtattgaatttgaagagaaaatggactgagtattccattaggta |
287 |
Q |
| |
|
|||| ||||||||| ||||||| ||||||| | | |||||| ||| ||||||||||||| |||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
10485300 |
aattgaccttgatccctaatgaattttgttctgggtatgaaatctctgaattgaatgtactgaattcgaaggtaaaatggactgaacattccattaggta |
10485201 |
T |
|
| Q |
288 |
gaatactttcagggatattgattgttgatcctgctgttgcgaagtttgcaccatatgtgaaattagacccaagagaattaagatatggacttagataggg |
387 |
Q |
| |
|
|||||| | ||| || ||||||||||| |||||||||| |||||| |||||| |||||| || | || ||||||||||| |||||||| ||| |||| |
|
|
| T |
10485200 |
taatactattaggaattttgattgttgacgctgctgttgcaaagtttacaccatgtgtgaagttgggtccgagagaattaaggtatggactaagaaaggg |
10485101 |
T |
|
| Q |
388 |
aagtccaaagctctctgct |
406 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
10485100 |
aagtccaaagctctgtgct |
10485082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 862 times since January 2019
Visitors: 6134