View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_high_32 (Length: 357)
Name: NF0847_high_32
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 30970222 - 30970364
Alignment:
| Q |
7 |
gtgagatgaagtgagctgaacaatttgtataaagacccaagaatcacattccacaagaagggaaataataccctgatcacaaaaggttttaagaccatat |
106 |
Q |
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| T |
30970222 |
gtgagatgaagtgagttgaacaatttgtataaagacccaagaatcacattccacaagaagggaaataataccctgatcccaaaaggttttaagaccatat |
30970321 |
T |
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| Q |
107 |
tcaagagacctcaaagctcaacataaatagcagtggaggtttt |
149 |
Q |
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| T |
30970322 |
taaagagacctcaaagctcaacataaatagcggtggaggtttt |
30970364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 30970598 - 30970750
Alignment:
| Q |
178 |
gatttttaaatttgtgatatttgttttctcaatttaaattgatagatannnnnnnnnnctcaacnnnnnnnngttgtgagattgttttctcnnnnnnntc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| || |
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| T |
30970598 |
gatttttaaatttgtgatatttgttttctcaatttaaattgatagatatattttttttctcaacaagaaaaagttgtgagattgttttctcaaaaaaatc |
30970697 |
T |
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| Q |
278 |
gactgagatctcattttctgaatttnnnnnnnntatttaataagtattttttg |
330 |
Q |
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| T |
30970698 |
gactgagatctcattttctgaattttaaaaaaatatttaataagtattttttg |
30970750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 30970536 - 30970593
Alignment:
| Q |
133 |
atagcagtggaggttttaa-attacaacacaaaattcttattatgggatttttaaatt |
189 |
Q |
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| T |
30970536 |
ataggagtggaggttttaatattacaacacaagattcttattatgggatttttaaatt |
30970593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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