View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_high_47 (Length: 229)

Name: NF0847_high_47
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_high_47
NF0847_high_47
[»] chr4 (15 HSPs)
chr4 (38-151)||(1519156-1519269)
chr4 (80-151)||(8184044-8184115)
chr4 (80-149)||(1548440-1548509)
chr4 (113-151)||(659756-659794)
chr4 (104-146)||(8187110-8187152)
chr4 (91-144)||(1600444-1600497)
chr4 (104-140)||(12116600-12116636)
chr4 (80-140)||(55908753-55908813)
chr4 (80-151)||(553493-553564)
chr4 (80-151)||(1513421-1513492)
chr4 (104-151)||(12121471-12121518)
chr4 (114-151)||(1489375-1489412)
chr4 (82-151)||(1524500-1524569)
chr4 (114-151)||(1537781-1537818)
chr4 (107-143)||(55505130-55505166)
[»] chr8 (7 HSPs)
chr8 (80-151)||(18315287-18315358)
chr8 (80-151)||(27922522-27922593)
chr8 (80-138)||(17628041-17628099)
chr8 (90-150)||(34936178-34936238)
chr8 (80-151)||(17636415-17636486)
chr8 (80-151)||(21235572-21235643)
chr8 (80-151)||(32151315-32151386)
[»] chr2 (3 HSPs)
chr2 (81-148)||(32785789-32785856)
chr2 (80-140)||(1037689-1037749)
chr2 (80-151)||(45245099-45245170)
[»] chr6 (8 HSPs)
chr6 (80-152)||(6402874-6402946)
chr6 (80-151)||(6415980-6416051)
chr6 (80-151)||(7994196-7994267)
chr6 (80-151)||(12102280-12102351)
chr6 (80-138)||(6585264-6585322)
chr6 (80-150)||(28935063-28935133)
chr6 (84-151)||(6432179-6432246)
chr6 (104-152)||(6394902-6394950)
[»] chr5 (2 HSPs)
chr5 (80-151)||(41901549-41901620)
chr5 (80-151)||(32267489-32267560)
[»] chr1 (2 HSPs)
chr1 (80-151)||(19468513-19468584)
chr1 (80-132)||(7554502-7554554)
[»] chr3 (2 HSPs)
chr3 (80-150)||(13470747-13470817)
chr3 (83-148)||(51113798-51113863)
[»] chr7 (1 HSPs)
chr7 (83-150)||(10614610-10614677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (83-140)||(649-706)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 1519269 - 1519156
Alignment:
Q  38 caacaatatatttgtaaccattgcaaaacacaattacaagtgtttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacct 137  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1519269 caacaatatatttgtaaccatttcaaaacacaattacaagtgtttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacct 1519170  T
Q  138 ctagtttgggaact 151  Q
    ||||||||||||||    
T  1519169 ctagtttgggaact 1519156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 8184115 - 8184044
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||  |||||||||||   |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8184115 tttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaact 8184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 1548509 - 1548440
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaa 149  Q
    ||||||||||||| ||||| ||  |||||||  |||||||||||||||||||||||||| ||||||||||    
T  1548509 tttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 1548440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 659756 - 659794
Alignment:
Q  113 cttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||||||||||||||||||||||||||||||||    
T  659756 cttgtatgtgacaagttcaacacctctagtttgggaact 659794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 8187152 - 8187110
Alignment:
Q  104 tcatcaacccttgtatgtgacaagttcaacacctctagtttgg 146  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  8187152 tcatcaactcttgtatgtgacaagttcaacacctccagtttgg 8187110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 1600444 - 1600497
Alignment:
Q  91 atagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagttt 144  Q
    |||||||||||  || ||||||||||||| |||||||||||||||||| |||||    
T  1600444 atagagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagttt 1600497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 12116636 - 12116600
Alignment:
Q  104 tcatcaacccttgtatgtgacaagttcaacacctcta 140  Q
    |||||||| ||||||||||||||||||||||||||||    
T  12116636 tcatcaacacttgtatgtgacaagttcaacacctcta 12116600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 55908813 - 55908753
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctcta 140  Q
    |||||||||| |||||||| ||  |||||||| | ||||||||||||||| ||||||||||    
T  55908813 tttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctcta 55908753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 553493 - 553564
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||| |||||||  |||||||  |||||||| ||||||  |||||||||||||||||| |||||| |||||    
T  553493 tttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaact 553564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 1513492 - 1513421
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||| || ||||||| ||  ||||||||  |||||  ||||||||||||||| |||||||||||||||    
T  1513492 tttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaact 1513421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 12121518 - 12121471
Alignment:
Q  104 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||  |||||| ||||||||||||||| |||||||||||||||    
T  12121518 tcatcaacatttgtatatgacaagttcaacacttctagtttgggaact 12121471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 1489412 - 1489375
Alignment:
Q  114 ttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaact 1489375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 1524569 - 1524500
Alignment:
Q  82 tgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||| |||||||| ||  |||||||| |||||| ||||||| ||||||||||| |  |||||||||    
T  1524569 tgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaact 1524500  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 1537818 - 1537781
Alignment:
Q  114 ttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaact 1537781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 55505166 - 55505130
Alignment:
Q  107 tcaacccttgtatgtgacaagttcaacacctctagtt 143  Q
    |||||| |||||| |||||||||||||||||||||||    
T  55505166 tcaacctttgtatatgacaagttcaacacctctagtt 55505130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 18315358 - 18315287
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  18315358 tttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaact 18315287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 27922522 - 27922593
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||| ||| |||||||  ||||||||  |||||| |||||||||||||||||| | ||||||||||    
T  27922522 tttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaact 27922593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 17628099 - 17628041
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctc 138  Q
    ||||||||||||  ||||||||  |||||||| || |||||||||||||||||||||||    
T  17628099 tttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctc 17628041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 34936238 - 34936178
Alignment:
Q  90 catagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaac 150  Q
    ||||||||| ||  |||||||| ||||||| |||||||| ||||||||||||||| |||||    
T  34936238 catagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaac 34936178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 17636486 - 17636415
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||||||| | |||||  || ||||| | ||| |||||||||||||||||||| | ||||||||||    
T  17636486 tttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaact 17636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 21235572 - 21235643
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||| |||| ||||||| |||  | |||||| | ||||| |||||||||||||||||| ||||||||||||    
T  21235572 tttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaact 21235643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 32151315 - 32151386
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||||||||||||| ||  ||||||| |||||||  ||||||||| |||||||| || |||| ||||    
T  32151315 tttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaact 32151386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 32785856 - 32785789
Alignment:
Q  81 ttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttggga 148  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||||||||||||||||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 32785789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 1037749 - 1037689
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctcta 140  Q
    |||||||||| |||||||| ||  |||||||| | ||||||||||||||| ||||||||||    
T  1037749 tttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctcta 1037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 45245170 - 45245099
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||||||| ||||| ||  ||||||||| |||| | |||||| ||||||||||| ||||| ||||||    
T  45245170 tttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaact 45245099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 6402874 - 6402946
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaactg 152  Q
    ||||||||||||||||||| ||  ||||||||| | |||| ||||||||||||||| ||||||| ||||||||    
T  6402874 tttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactg 6402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 6415980 - 6416051
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||||||||||||||| | ||  |||| |||| |||||| |||||||||||||||||| || |||||||||    
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaact 6416051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 7994267 - 7994196
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||||||| |||| ||  |||| ||||||||||| ||||| ||||||||||||||| || ||||||    
T  7994267 tttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaact 7994196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 12102280 - 12102351
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    ||||| |||| ||||||| |||  | |||||| | |||||||||||||||||||||||| ||||||||||||    
T  12102280 tttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaact 12102351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 6585322 - 6585264
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctc 138  Q
    ||||||||||||||||||| ||  ||||||||| |||||| |||||||||||| |||||    
T  6585322 tttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctc 6585264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 28935063 - 28935133
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaac 150  Q
    ||||| ||||||  ||||||||  || ||||| |||||||||||||||||||||||||| |||| ||||||    
T  28935063 tttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaac 28935133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 6432179 - 6432246
Alignment:
Q  84 agatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||| |||| ||  |||||||| ||||||| |||||||||||||||||  || |||||||||    
T  6432179 agatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaact 6432246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 6394902 - 6394950
Alignment:
Q  104 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaactg 152  Q
    |||||||| ||||||| |||||||||||||||||| || | ||||||||    
T  6394902 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactg 6394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 41901620 - 41901549
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||| ||| |||||||  ||||||||  |||||| |||||||||||||||||| ||||||||||||    
T  41901620 tttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaact 41901549  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 32267489 - 32267560
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||| ||| |||||||  ||||||||  |||| |||||||||||||| ||||| | ||||||||||    
T  32267489 tttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaact 32267560  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 19468584 - 19468513
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaact 151  Q
    |||||||||||||| |||| ||  ||||||||| |||||| |||||| ||||||||||| || |||||||||    
T  19468584 tttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaact 19468513  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7554502 - 7554554
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaa 132  Q
    |||||||||| |||||||||||  |||||||| ||||||| ||| ||||||||    
T  7554502 tttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 13470817 - 13470747
Alignment:
Q  80 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaac 150  Q
    |||||||||| |||||||| ||  |||| |||| |||||| |||||||||||||||||| || ||||||||    
T  13470817 tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaac 13470747  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 51113863 - 51113798
Alignment:
Q  83 gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttggga 148  Q
    |||||||||||||||| ||  ||||||||| |||||| ||||||||  |||||||| |||||||||    
T  51113863 gagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttggga 51113798  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 10614610 - 10614677
Alignment:
Q  83 gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaac 150  Q
    |||||||||||||||| ||  |||| |||| | |||| |||||||||||||||||| || ||||||||    
T  10614610 gagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaac 10614677  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 706 - 649
Alignment:
Q  83 gagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctcta 140  Q
    ||||||| |||||||| ||  ||||| || ||||||||||||||||| ||||||||||    
T  706 gagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctcta 649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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