View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0847_high_50 (Length: 224)
Name: NF0847_high_50
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_high_50 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 38875005 - 38874794
Alignment:
| Q |
13 |
agaacctgtgaacgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcgagagcttcacgccccccagcttcatcatgaccataaccag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38875005 |
agaacctgtgaacgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcaagagcttcacgccccccagtttcatcatgaccataaccag |
38874906 |
T |
|
| Q |
113 |
tgcaaccaccaaagtgctgacagcattaacaaaataaccaattagggcatgtttagattgccttatttgagcttatttactcgcataaagaccaatgaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38874905 |
tgcaaccaccaaagtgctgacagcattaacaaaataaccaattagggcatgtttagattgacttatttgagcttatttactagcataaagaccaatgaga |
38874806 |
T |
|
| Q |
213 |
ctaagcctgttt |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38874805 |
ctaagcctgttt |
38874794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 29249550 - 29249513
Alignment:
| Q |
156 |
agggcatgtttagattgccttatttgagcttatttact |
193 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29249550 |
agggcatgtttggattgacttatttgagcttatttact |
29249513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 8651265 - 8651310
Alignment:
| Q |
156 |
agggcatgtttagattgccttatttgagcttatttactcgcataaa |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | || ||||||| |
|
|
| T |
8651265 |
agggcatgtttggattgccttatttgagcttatcttctagcataaa |
8651310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 2416473 - 2416433
Alignment:
| Q |
153 |
attagggcatgtttagattgccttatttgagcttatttact |
193 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
2416473 |
attagggcatgtttagattgacttatttgagtttatctact |
2416433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1856 times since January 2019
Visitors: 6150