View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_11 (Length: 570)
Name: NF0847_low_11
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 30 - 557
Target Start/End: Original strand, 1247843 - 1248370
Alignment:
| Q |
30 |
gcttcacccttcacttcagccttttctttattctatcaatagaaattaatcaatcatgccttccaaataaataagatgatgaaaaatgaaataaataatg |
129 |
Q |
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| T |
1247843 |
gcttcacccttcacttcagccttttctttattctatcaatagaaattaatcaatcatgccttccaaataaataagatgatgaaaaatgaaataaataatg |
1247942 |
T |
|
| Q |
130 |
ttgcaatactaatagatttgtatcatcaaaggaaattgctagttatggcgagagataacaataccgaaaatttcacgaatgactattttatacttagtca |
229 |
Q |
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| T |
1247943 |
ttgcaatactaatagatttgtatcatcaaaggaaattgctagttatggcgagagataacaataccgaaaatttcacgaatgactattttatacttagtca |
1248042 |
T |
|
| Q |
230 |
nnnnnnnaactatatggtgttggatattcaatatcggatttatgtgcatgaatatgattgcttatataagaatacatacctcactgagcaaggtgcctag |
329 |
Q |
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| T |
1248043 |
tttttttaactatatggtgttggatattcaatatcggatttatgtgcatgaatatgattgcttatataagaatacatacctcactgagcaaggtgcctag |
1248142 |
T |
|
| Q |
330 |
agacttatcgtcggaggccttaacggtctcctcagctttggtctccttggcttgctgttcaaccttaacctcctcggtgacaggctcggggacagggact |
429 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1248143 |
agacttatcgtcagaggccttaacggtctcctcagctttggtctccttggcttgctgttcaaccttaacctcctcggtgacaggctcagggacagggact |
1248242 |
T |
|
| Q |
430 |
ggagcgtcactttcgtcggtcctagggttgccagcacagttgcccattttcaatgattattattaataaatgtacaatgtgggagaacaagccaagtaat |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248243 |
ggagcgtcactttcgtcggtcctagggttgccagcacagttgcccattttcaatgattattattaataaatgtacaatgtgggagaacaagccaagtaag |
1248342 |
T |
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| Q |
530 |
ttggtcttgttcttgatttgttctccct |
557 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1248343 |
ttggtcttgttcttgatttgttctccct |
1248370 |
T |
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