View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_12 (Length: 564)
Name: NF0847_low_12
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 3 - 523
Target Start/End: Complemental strand, 32250464 - 32249947
Alignment:
| Q |
3 |
tataaataactatatttgacgtgatttgattggatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgata |
102 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250464 |
tataaataactatatttgacgcgatttgattggatgcatgagtaacaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgata |
32250365 |
T |
|
| Q |
103 |
ataaccaagagaggtactataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaact |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32250364 |
ataaccaagagaggtactataagctagaatttctactttaattactccatacatctatatatttgagtctgagcaacactgttacggcttaatgaaaact |
32250265 |
T |
|
| Q |
203 |
gtaaatgaataaagtagagtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttct |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32250264 |
gtaaatgaataaagtagagtgaaaaagaagtaatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatatatttgttct |
32250165 |
T |
|
| Q |
303 |
cattcatttaactgcagtcatgattccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtag |
402 |
Q |
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|
|||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
32250164 |
cattcatttaactgcagtcaggattccatatgtgaagatagcaacaaatataccctctgtgatgtctc--tgcacatatctatcataatgtgatgtgtag |
32250067 |
T |
|
| Q |
403 |
gaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactata |
502 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
32250066 |
gaaattaagaattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactata |
32249968 |
T |
|
| Q |
503 |
aatcaccactccacaggttct |
523 |
Q |
| |
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||||||||||||||||||||| |
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| T |
32249967 |
aatcaccactccacaggttct |
32249947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 35 - 523
Target Start/End: Complemental strand, 32244723 - 32244238
Alignment:
| Q |
35 |
gatgcatgagtaaaaatgttttaacctttgagttaggttgtttctggtgtgaaggcttcagtttgataataaccaagagaggtactat-aagctagaatt |
133 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| | |||||||| || ||||||| ||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
32244723 |
gatgcatgagtaaaaatgttttacgctta-agttatgctgtttctgttgcgaaggctacagattgataataacaaagagaggtactattaagctagaatt |
32244625 |
T |
|
| Q |
134 |
tctactttaattactccatacatctatatatttgagtctgagcaacactgttatggcttaatgaaaactgtaaatgaataaagtagagtgaaaaagaagt |
233 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
32244624 |
tctactttaatcactacatacatctatatatttgagtctgagcaacactgttactgcttaatgaaaactgtaaatgaattaagtaaagtgaaaaagaagt |
32244525 |
T |
|
| Q |
234 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32244524 |
aatgatatcaacatgtaaagaatcgacgcagaatgcatgggaccatcccatgccatatacatttgttctcattcatttaactgcagtcatgattccatat |
32244425 |
T |
|
| Q |
334 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctga |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
32244424 |
gtaaagataccaacaaatatacactctgtgatgtctctgtgcacat--atatcttaatgtgatgtgtaggaaattaagaattcataggcatgcatggtga |
32244327 |
T |
|
| Q |
434 |
agaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
523 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32244326 |
agaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccactccacaggttct |
32244238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 378 - 523
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
378 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
477 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
|
| Q |
478 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
523 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 1635030 - 1634996
Alignment:
| Q |
23 |
gtgatttgattggatgcatgagtaaaaatgtttta |
57 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
1635030 |
gtgatttgattggatgcatgtgtaaaaatgtttta |
1634996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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