View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_14 (Length: 548)

Name: NF0847_low_14
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_14
NF0847_low_14
[»] chr7 (9 HSPs)
chr7 (47-541)||(33902202-33902706)
chr7 (420-528)||(24211326-24211434)
chr7 (390-528)||(46603696-46603832)
chr7 (435-528)||(9603484-9603577)
chr7 (435-528)||(9831055-9831148)
chr7 (435-517)||(4040862-4040948)
chr7 (431-491)||(45996484-45996544)
chr7 (420-464)||(3399435-3399479)
chr7 (449-521)||(30003801-30003873)
[»] scaffold0192 (1 HSPs)
scaffold0192 (390-528)||(13360-13498)
[»] chr8 (7 HSPs)
chr8 (390-528)||(25267030-25267168)
chr8 (418-528)||(2233868-2233978)
chr8 (420-528)||(32162764-32162870)
chr8 (421-528)||(39907939-39908046)
chr8 (421-482)||(17072689-17072750)
chr8 (421-482)||(17575521-17575582)
chr8 (7-43)||(38874316-38874352)
[»] chr3 (16 HSPs)
chr3 (391-528)||(41242179-41242316)
chr3 (431-528)||(16041133-16041230)
chr3 (431-528)||(16053073-16053170)
chr3 (390-528)||(11076939-11077076)
chr3 (431-528)||(16037577-16037674)
chr3 (420-520)||(17517888-17517988)
chr3 (391-517)||(37820798-37820924)
chr3 (431-528)||(39933347-39933443)
chr3 (426-525)||(9821003-9821102)
chr3 (420-528)||(28389387-28389501)
chr3 (385-528)||(31229723-31229866)
chr3 (424-528)||(5050593-5050697)
chr3 (420-457)||(34730789-34730826)
chr3 (420-508)||(50744732-50744820)
chr3 (420-457)||(34870135-34870172)
chr3 (473-529)||(6276753-6276809)
[»] chr6 (6 HSPs)
chr6 (420-528)||(12185707-12185815)
chr6 (421-528)||(9456209-9456316)
chr6 (420-528)||(3441218-3441326)
chr6 (420-528)||(10068183-10068289)
chr6 (420-512)||(25070402-25070494)
chr6 (480-529)||(10483415-10483464)
[»] chr4 (8 HSPs)
chr4 (421-528)||(3067606-3067713)
chr4 (421-528)||(5050426-5050533)
chr4 (432-520)||(4059118-4059206)
chr4 (422-494)||(31040283-31040356)
chr4 (420-511)||(43967986-43968077)
chr4 (426-528)||(18371146-18371248)
chr4 (424-494)||(36622116-36622186)
chr4 (420-528)||(45891795-45891904)
[»] chr1 (7 HSPs)
chr1 (420-528)||(25808484-25808592)
chr1 (392-528)||(46298512-46298648)
chr1 (420-528)||(31501054-31501162)
chr1 (421-503)||(19339915-19339997)
chr1 (420-527)||(49423341-49423448)
chr1 (420-528)||(23392714-23392823)
chr1 (449-528)||(51540737-51540817)
[»] chr2 (4 HSPs)
chr2 (425-528)||(2126184-2126287)
chr2 (421-510)||(11152190-11152279)
chr2 (423-485)||(22348730-22348792)
chr2 (423-494)||(22345686-22345757)
[»] chr5 (5 HSPs)
chr5 (422-528)||(35075847-35075954)
chr5 (431-516)||(31559096-31559181)
chr5 (420-473)||(5150835-5150888)
chr5 (420-527)||(10020725-10020829)
chr5 (467-528)||(7802030-7802090)
[»] scaffold0402 (1 HSPs)
scaffold0402 (421-503)||(2978-3060)
[»] scaffold1786 (1 HSPs)
scaffold1786 (420-528)||(365-473)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 47 - 541
Target Start/End: Complemental strand, 33902706 - 33902202
Alignment:
Q  47 catgaatgtgagaaatgtggaccatggtgtacattgaaaagttagagaaaaagaa-----------aatggataatgaagaattgaaatgtgtgagactg 135  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||||||||||||||||||||||| |    
T  33902706 catgaacgtgagaaatgtggaccatggtgtgcattgaaaagttagagaaaaagaattgaaaaagaaaatggataatgaagaattgaaatgtgtgagacag 33902607  T
Q  136 tgtgggaattggagaggaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcgatggttttgagtcaaatatcaatcgttag 235  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33902606 tgtgg-aattggagaggaagaagaagaaagcgtgagaatagggtctaatgaggaaacgttctattctctcaatggttttgagtcaaatatcaatcgttag 33902508  T
Q  236 cattatttaaagatgttattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatattaatcaacaatggtattgaatgaacatc 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33902507 cattatttaaagatgttattattgataaaaggtgtaacgtgacctcaatgatctcaaagtgatggtggatattaatcaacaatggtatcgaatgaacatc 33902408  T
Q  336 aaaaagttgattctacttggatttatttcaacacaccatataagaatacaatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaaga 435  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  33902407 aaaaagttgattctacttgcatttatttcaacacaccatacaagaatccaatgagaaatgctaacttatgccctgaaggcaaaagttaaaaaattaaaga 33902308  T
Q  436 taaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttcggatat 535  Q
    || ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  33902307 tagaaatattttattgaaaattatgcatttaatattttagaaatttaaaatcttatcttttcaagacataatttataatttaattccatttttcgaatat 33902208  T
Q  536 tgttgg 541  Q
    | ||||    
T  33902207 ttttgg 33902202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 24211434 - 24211326
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    |||||||||| ||||||| ||||||||||||||||||| || ||||||||||  |||||||  |||| | ||||| |||| |||||||||||||||||||    
T  24211434 gttaagaaatcaaagatagaaatattttgttggaaattgtgtattcaatattcaagaaattggaaatctaatcttttcaaaacataatttatgatttaat 24211335  T
Q  520 tccattttt 528  Q
    || ||||||    
T  24211334 tctattttt 24211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 390 - 528
Target Start/End: Original strand, 46603696 - 46603832
Alignment:
Q  390 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 489  Q
    ||||||||||||| || ||| || ||||| ||||||||| |||||||| |||  |||| ||||||||| ||||||  || ||||||||||||||||| ||    
T  46603696 gaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgttttagaaatttaaaatctt 46603795  T
Q  490 atcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||| |||||||  |||||||  |||||||||||||||    
T  46603796 atcttttcaagac--aatttatattttaattccattttt 46603832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 435 - 528
Target Start/End: Original strand, 9603484 - 9603577
Alignment:
Q  435 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9603484 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9603577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 435 - 528
Target Start/End: Original strand, 9831055 - 9831148
Alignment:
Q  435 ataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||||||||| ||| ||||||||||||  || ||||||||||||||||| ||||||| |||| |||  ||||||| |||||||| ||||||    
T  9831055 ataaaaatattttattgaaaattatgcatttcatgttttagaaatttaaaatcttatcttttcaaaacaatatttatgttttaattctattttt 9831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 4040862 - 4040948
Alignment:
Q  435 ataaaaatattttgttggaaattatgcattcaat----attttagaaatttaaaattttatcttatcaagacataatttatgattta 517  Q
    ||||||| ||||||||||||||| ||||||||||    ||| ||||| |||||||| ||||||| |||||||| |||||||||||||    
T  4040862 ataaaaacattttgttggaaattgtgcattcaatcaatattctagaattttaaaatattatcttttcaagacaaaatttatgattta 4040948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 45996484 - 45996544
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 491  Q
    ||||||||||||||||| ||| ||||| || ||| |||||| || ||||||||||||||||    
T  45996484 aaagataaaaatattttattgtaaattgtgtatttaatattctaaaaatttaaaattttat 45996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 464
Target Start/End: Complemental strand, 3399479 - 3399435
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcatt 464  Q
    |||||||||||||| |||||| | |||||||||||||| ||||||    
T  3399479 gttaagaaattaaatataaaagttttttgttggaaattttgcatt 3399435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 521
Target Start/End: Original strand, 30003801 - 30003873
Alignment:
Q  449 ttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattc 521  Q
    |||||||||||| ||||||||| ||| ||| ||||||  |||| || |||| ||| |||||||| ||||||||    
T  30003801 ttggaaattatgtattcaatatcttaaaaagttaaaaacttattttttcaatacaaaatttatgttttaattc 30003873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 390 - 528
Target Start/End: Original strand, 13360 - 13498
Alignment:
Q  390 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 489  Q
    |||||| |||||| ||| || || ||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||    
T  13360 gaaatgttaacttgtgttctcaaggcacaagttaagaaagcaaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatctt 13459  T
Q  490 atcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  13460 atcttttcaagacataatttatgatttaattgcattttt 13498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 390 - 528
Target Start/End: Complemental strand, 25267168 - 25267030
Alignment:
Q  390 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 489  Q
    |||||| |||||| || ||| |||||| | |||||||||  ||||||| ||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||    
T  25267168 gaaatgttaacttctgccctcaaagcataagttaagaaaccaaagatagaaacattttgttggaaattgtgcattcgatattatagaaatttaaaatctt 25267069  T
Q  490 atcttatcaagacataatttatgatttaattccattttt 528  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  25267068 atcatttcaagacataatttatgatttaattccattttt 25267030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 418 - 528
Target Start/End: Complemental strand, 2233978 - 2233868
Alignment:
Q  418 aggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattta 517  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||| |||||||||||||    
T  2233978 aggttaaaaaaccaaagataaaagtattttgttggaaattatgcattcaatattctaaaaatttaaaattttatcttttcaaaacaaaatttatgattta 2233879  T
Q  518 attccattttt 528  Q
    |||| ||||||    
T  2233878 attctattttt 2233868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 32162764 - 32162870
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    |||||||||| ||| ||||||| |||||||| ||| || || || ||||||||||||||| |||||| |||| || |||| | | |||||||||||||||    
T  32162764 gttaagaaatcaaaaataaaaacattttgttcgaa-ttgtgtat-caatattttagaaatgtaaaatcttatattttcaaaataaaatttatgatttaat 32162861  T
Q  520 tccattttt 528  Q
    |||||||||    
T  32162862 tccattttt 32162870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 528
Target Start/End: Original strand, 39907939 - 39908046
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    |||| ||| |||||||| ||||||||| | | | ||||||||||  |||||||||||||||||||| ||||||| | || | | |||||||| |||||||    
T  39907939 ttaaaaaactaaagatataaatattttatagaatattatgcatttcatattttagaaatttaaaatgttatctttttaaaataaaatttatgttttaatt 39908038  T
Q  521 ccattttt 528  Q
     |||||||    
T  39908039 tcattttt 39908046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 482
Target Start/End: Original strand, 17072689 - 17072750
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 482  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17072689 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17072750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 482
Target Start/End: Complemental strand, 17575582 - 17575521
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattta 482  Q
    ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||||||    
T  17575582 ttaagaaatcaaagataaaaatattttgttgtggattgtgcattcaatattctagaaattta 17575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 38874316 - 38874352
Alignment:
Q  7 cttcgctgcttcaaaaccattcagagttaatattgtt 43  Q
    ||||||||||||||||||||||||||||||| |||||    
T  38874316 cttcgctgcttcaaaaccattcagagttaattttgtt 38874352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 391 - 528
Target Start/End: Complemental strand, 41242316 - 41242179
Alignment:
Q  391 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 490  Q
    ||||| ||||||||| ||| || ||| | |||||||||  ||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||| |||    
T  41242316 aaatgttaacttatgccctcaaggcacaagttaagaaaccaaagataaaaacattttgttggaaattgtgcatttaatattttagaaatttgaaatctta 41242217  T
Q  491 tcttatcaagacataatttatgatttaattccattttt 528  Q
    |||| ||| |||||||||||||||||||||| ||||||    
T  41242216 tcttttcaggacataatttatgatttaattctattttt 41242179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 16041133 - 16041230
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  16041133 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccattttt 16041230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 16053073 - 16053170
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  16053073 aaagatagaaacattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttatgatttaattccaatttt 16053170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 390 - 528
Target Start/End: Complemental strand, 11077076 - 11076939
Alignment:
Q  390 gaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttt 489  Q
    ||||||||||||| |||| | || ||| | |||||||||| ||||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||| ||    
T  11077076 gaaatgctaacttgtgtcgttaaggcacaagttaagaaatcaaagatagaaacattt-gttggaaattgtgcaatcaatattttagaaatttaaaatctt 11076978  T
Q  490 atcttatcaagacataatttatgatttaattccattttt 528  Q
    || || |||||||| |||||||| |||||||||||||||    
T  11076977 atattttcaagacaaaatttatgttttaattccattttt 11076939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 16037577 - 16037674
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||| ||| |||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  16037577 aaagatagaaacattttgatggaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacataatttgtgatttaattccattttt 16037674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 420 - 520
Target Start/End: Complemental strand, 17517988 - 17517888
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||||| || ||||||||| | ||||||| |||||| |||||||||||||||||    
T  17517988 gttaagaaatcaaagatagaaatattttgttagaaattgtgcattcaatattctaaaaatttaaattcttatcttttcaagatataatttatgatttaat 17517889  T
Q  520 t 520  Q
    |    
T  17517888 t 17517888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 517
Target Start/End: Complemental strand, 37820924 - 37820798
Alignment:
Q  391 aaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaatttta 490  Q
    ||||| ||||||||| ||| ||| || | ||||| ||| |||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||    
T  37820924 aaatgttaacttatgcccttaaaacacaagttaataaactaaatataaaaatattttattggaaattatgcattccatgttttagaaatttaaaatctta 37820825  T
Q  491 tcttatcaagacataatttatgattta 517  Q
    |||| | ||||||  ||||||| ||||    
T  37820824 tctttttaagacaatatttatgtttta 37820798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 528
Target Start/End: Original strand, 39933347 - 39933443
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    |||||||||||  |||||||| ||||| ||||||||||||| || |||||| |||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  39933347 aaagataaaaaatttttgttgaaaattgtgcattcaatattctaaaaattt-aaattttatcttttcaaaacacaatttatgatttaattctattttt 39933443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 426 - 525
Target Start/End: Complemental strand, 9821102 - 9821003
Alignment:
Q  426 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 525  Q
    |||||||||||| |||||||||||| |||||| ||||||||| ||| |  |||||| |||| ||||||| |||| ||||||||||| ||| |||||||||    
T  9821102 aaattaaagatagaaatattttgttagaaattgtgcattcaagattctgaaaattttaaatcttatcttttcaaaacataatttataattcaattccatt 9821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 28389387 - 28389501
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttag------aaatttaaaattttatcttatcaagacataatttatga 513  Q
    |||||||||  ||||||||||||||||||||||||||| | |||| ||| || |||      ||||||||||| ||||||| |||||| |||||||||||    
T  28389387 gttaagaaaccaaagataaaaatattttgttggaaattgtacatttaatgttctagtcctataaatttaaaatattatcttttcaagatataatttatga 28389486  T
Q  514 tttaattccattttt 528  Q
    |||||||| ||||||    
T  28389487 tttaattctattttt 28389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 528
Target Start/End: Complemental strand, 31229866 - 31229723
Alignment:
Q  385 aatgagaaatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaa 484  Q
    |||| |||||| ||| || || ||| |||||| | ||||||| |||| | ||| ||| ||||| ||||||||| | ||||| || |||||||||||||||    
T  31229866 aatgggaaatgttaatttgtgcccttaaagcataagttaagagattacatatagaaacattttattggaaattgtacattctatgttttagaaatttaaa 31229767  T
Q  485 attttatcttatcaagacataatttatgatttaattccattttt 528  Q
    || ||||  | |||||| |||||||||| |||| ||| ||||||    
T  31229766 atcttatgatttcaagatataatttatgttttacttctattttt 31229723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 528
Target Start/End: Complemental strand, 5050697 - 5050593
Alignment:
Q  424 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattcca 523  Q
    |||| ||||| ||| ||||||||| ||  ||||| |||||||||||| ||| |||||||||||||| |||| |||| ||| || |||   ||||||||||    
T  5050697 agaagttaaacatagaaatattttcttaaaaattgtgcattcaatatattaaaaatttaaaattttgtcttttcaatacaaaagttacattttaattcca 5050598  T
Q  524 ttttt 528  Q
    |||||    
T  5050597 ttttt 5050593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 34730826 - 34730789
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaatt 457  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  34730826 gttaagaaactaaagataaaaatattttgttggaaatt 34730789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 508
Target Start/End: Complemental strand, 50744820 - 50744732
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatt 508  Q
    ||||||||| |||||||| ||||||||| ||  ||||| ||||||  |||||||| ||||||||||| ||| ||| || ||||| ||||    
T  50744820 gttaagaaactaaagatataaatattttattaaaaattgtgcatttcatattttaaaaatttaaaatcttaacttctctagacaaaatt 50744732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 34870172 - 34870135
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaatt 457  Q
    |||||||||  |||||||||||||||||||||||||||    
T  34870172 gttaagaaaccaaagataaaaatattttgttggaaatt 34870135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 6276753 - 6276809
Alignment:
Q  473 tagaaatttaaaattttatcttatcaagacataatttatgatttaattccatttttc 529  Q
    ||||||||| |||| |||| || |||||||||||||||| ||||||||  |||||||    
T  6276753 tagaaattttaaatcttatattttcaagacataatttataatttaattatatttttc 6276809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 12185815 - 12185707
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||||||| |||| ||| ||||||||||||| ||||| ||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  12185815 gttaagaaactaaaaatagaaatattttgttgaaaattgtgcattcaatattctagaaattcaaaatcttatcttttcaagacataatttatgatttaat 12185716  T
Q  520 tccattttt 528  Q
    |||||||||    
T  12185715 tccattttt 12185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 421 - 528
Target Start/End: Complemental strand, 9456316 - 9456209
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||||||||| |||| || |||||||||||||||| ||||||||    
T  9456316 ttaagaaatcaaagatagaaatattttgttggaaattgtgcattcaatagtctagaaatttaaaatcttatattttcaagacataatttataatttaatt 9456217  T
Q  521 ccattttt 528  Q
    ||||||||    
T  9456216 ccattttt 9456209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 3441326 - 3441218
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||| |||||||||||| ||| ||||| | ||||||| ||||||  ||||||||||| |||||||| |||| || |||||| | |||||||| ||||||    
T  3441326 gttaaaaaattaaagatagaaacattttataggaaattgtgcatttcatattttagaactttaaaatcttatattttcaagataaaatttatgttttaat 3441227  T
Q  520 tccattttt 528  Q
    | |||||||    
T  3441226 ttcattttt 3441218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 10068183 - 10068289
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||||||| |||| ||| ||||||||| |||||  || ||||||  || ||||||||||||||||||||||  | |||||||| |||||||| ||||||    
T  10068183 gttaagaaactaaatatagaaatattttattgga--ttgtgcatttcatgttttagaaatttaaaattttattctgtcaagacaaaatttatgttttaat 10068280  T
Q  520 tccattttt 528  Q
    | |||||||    
T  10068281 ttcattttt 10068289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 512
Target Start/End: Complemental strand, 25070494 - 25070402
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatg 512  Q
    ||||| ||| |||||||| ||| ||||| ||  ||||| || |||  |||||||||||||||||||| ||||||| | |||||| ||||||||    
T  25070494 gttaaaaaactaaagatataaacattttattaaaaattgtgtatttcatattttagaaatttaaaatcttatcttttgaagacaaaatttatg 25070402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 529
Target Start/End: Complemental strand, 10483464 - 10483415
Alignment:
Q  480 ttaaaattttatcttatcaagacataatttatgatttaattccatttttc 529  Q
    ||||||| |||| || |||||||| |||||||| ||||||||||||||||    
T  10483464 ttaaaatcttatattttcaagacaaaatttatgttttaattccatttttc 10483415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 421 - 528
Target Start/End: Complemental strand, 3067713 - 3067606
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    ||||||||  ||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  3067713 ttaagaaaccaaagatagaaacattttgttggaaattgtgcattcaatattttagaaatttaaaatcttatcttttcaagaaataatttatgatttaatt 3067614  T
Q  521 ccattttt 528  Q
     |||||||    
T  3067613 tcattttt 3067606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 421 - 528
Target Start/End: Original strand, 5050426 - 5050533
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||||| ||||||||||||||||||||| ||||||| |  || |||||||||||||||||||    
T  5050426 ttaagaaaccaaagataaaaacattttattgaaaattgtgcatttaatattttagaaatttaaaatcttatcttcttgaggcataatttatgatttaatt 5050525  T
Q  521 ccattttt 528  Q
    | ||||||    
T  5050526 ctattttt 5050533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 520
Target Start/End: Complemental strand, 4059206 - 4059118
Alignment:
Q  432 aagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    |||||||||| ||||| || |||||| || |||  |||||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  4059206 aagataaaaacattttattagaaattgtgtattttatattttagaaatttaaaattttatcttttcaagacaaaatttatgttttaatt 4059118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 422 - 494
Target Start/End: Original strand, 31040283 - 31040356
Alignment:
Q  422 taagaaattaaagataaaaatattttgttggaaattatgcat-tcaatattttagaaatttaaaattttatctt 494  Q
    |||||||||||| ||||||||||||| ||||||||||||||| | ||| ||||||||||||||||| |||||||    
T  31040283 taagaaattaaatataaaaatattttattggaaattatgcatattaatgttttagaaatttaaaatcttatctt 31040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 420 - 511
Target Start/End: Complemental strand, 43968077 - 43967986
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttat 511  Q
    |||||||||  ||||||| ||| ||||||||| ||||| |||||| |||||| || |||||| |||| ||||||| ||||||||||||||||    
T  43968077 gttaagaaaccaaagatagaaacattttgttgaaaattgtgcatttaatattctaaaaattttaaatcttatcttttcaagacataatttat 43967986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 528
Target Start/End: Original strand, 18371146 - 18371248
Alignment:
Q  426 aaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccatt 525  Q
    |||||||||||| ||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| || | |||| | |||||||  ||||||||| ||    
T  18371146 aaattaaagatagaaatattttataggaaattgtgcattctatattttagaactttaaaatcttatatttttaagataaaatttatattttaattccttt 18371245  T
Q  526 ttt 528  Q
    |||    
T  18371246 ttt 18371248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 494
Target Start/End: Complemental strand, 36622186 - 36622116
Alignment:
Q  424 agaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 494  Q
    ||||| |||| ||| ||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||||||    
T  36622186 agaaagtaaacatataaacatttttttggaaattgtgcattcaatatattaaaaatttaaaattttatctt 36622116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 45891795 - 45891904
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatc-aagacataatttatgatttaa 518  Q
    |||||||||  |||| || ||| ||||||||||| ||| |||||||||| |  || ||||||||||| |||| || || |||||| || |||||||||||    
T  45891795 gttaagaaaccaaagttagaaacattttgttggagattgtgcattcaatgtcctaaaaatttaaaatcttattttttcaaagacaaaaattatgatttaa 45891894  T
Q  519 ttccattttt 528  Q
    ||| ||||||    
T  45891895 ttctattttt 45891904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 25808592 - 25808484
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    |||||||||  |||||||||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||| | ||||||  ||||||||||||||    
T  25808592 gttaagaaaccaaagataaaaatattttgttagaaattgtgtattcaatattttaaaaatttaaaattttatcttttgaagacaacatttatgatttaat 25808493  T
Q  520 tccattttt 528  Q
    |||||||||    
T  25808492 tccattttt 25808484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 392 - 528
Target Start/End: Original strand, 46298512 - 46298648
Alignment:
Q  392 aatgctaacttatgtcctgaaagcaaaggttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttat 491  Q
    |||||||||||||||||| ||  || | |||||||||  ||||||||||| ||||||||||||||| |  |||||||||| |||||||||||||| ||||    
T  46298512 aatgctaacttatgtccttaagacacaagttaagaaaccaaagataaaaacattttgttggaaattgtatattcaatattatagaaatttaaaatcttat 46298611  T
Q  492 cttatcaagacataatttatgatttaattccattttt 528  Q
    ||| ||||||||  ||||||| |||||||| ||||||    
T  46298612 cttttcaagacaacatttatgttttaattctattttt 46298648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 31501162 - 31501054
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||| |||| ||||||| ||| || |||||||||||| |||||| ||| || |||||||||||||| ||||||| |||| ||| || ||||||||||||    
T  31501162 gttaaaaaatcaaagatagaaacatattgttggaaattgtgcatttaatgttctagaaatttaaaatcttatcttttcaaaacaaaaattatgatttaat 31501063  T
Q  520 tccattttt 528  Q
    | |||||||    
T  31501062 ttcattttt 31501054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 503
Target Start/End: Original strand, 19339915 - 19339997
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 503  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  19339915 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 19339997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 527
Target Start/End: Original strand, 49423341 - 49423448
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||| |||||||| ||||||||||||| ||| ||||| ||||||  || ||||| ||||||||||| ||||||| | |||| |  ||||||| ||||||    
T  49423341 gttaataaattaaacataaaaatattttattgaaaattgtgcatttcatgttttaaaaatttaaaatcttatctttttaagataatatttatgttttaat 49423440  T
Q  520 tccatttt 527  Q
    || |||||    
T  49423441 tctatttt 49423448  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 23392823 - 23392714
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaattt-aaaattttatcttatcaagacataatttatgatttaa 518  Q
    |||||||||||||| ||  ||||||||| ||  ||||| |||||| ||||||||| || ||| ||||| |||| || | |||| | |||||||  |||||    
T  23392823 gttaagaaattaaaaattgaaatattttatttaaaattgtgcatttaatattttaaaattttaaaaatcttatatttttaagataaaatttattttttaa 23392724  T
Q  519 ttccattttt 528  Q
    ||||||||||    
T  23392723 ttccattttt 23392714  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 528
Target Start/End: Original strand, 51540737 - 51540817
Alignment:
Q  449 ttggaaattatgcattcaatattttagaaa-tttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    ||||||||| || ||||| ||||||| ||| ||||||||||||| || | ||| || || ||||| |||||||||||||||    
T  51540737 ttggaaattgtgtattcattattttaaaaagtttaaaattttattttgttaagtcaaaacttatgttttaattccattttt 51540817  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 425 - 528
Target Start/End: Complemental strand, 2126287 - 2126184
Alignment:
Q  425 gaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccat 524  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  |||| || ||||||||| |||||||||||||||||||    
T  2126287 gaaactaaagatagaaatattttgttggaaattgtgcattcaatattttaaaaatttaaaaacttatattttcaagacatgatttatgatttaattccat 2126188  T
Q  525 tttt 528  Q
    ||||    
T  2126187 tttt 2126184  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 421 - 510
Target Start/End: Original strand, 11152190 - 11152279
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataattta 510  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  11152190 ttaagaaatcaaagatgaaaatattttgttggaaattgtgcattcaatattctagaaatttaaaatcttatcttctcaagacataattta 11152279  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 485
Target Start/End: Complemental strand, 22348792 - 22348730
Alignment:
Q  423 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaa 485  Q
    |||||| |||| ||||||||||||| ||| ||||| |||||||||||||||| || |||||||    
T  22348792 aagaaactaaatataaaaatattttcttgaaaattgtgcattcaatattttaaaagtttaaaa 22348730  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 494
Target Start/End: Complemental strand, 22345757 - 22345686
Alignment:
Q  423 aagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatctt 494  Q
    ||||||||||| ||  || |||||| || |||||| |||||||||||||||| | |||||||| ||||||||    
T  22345757 aagaaattaaatatttaagtattttctttgaaattgtgcattcaatattttaaacatttaaaaatttatctt 22345686  T

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Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 422 - 528
Target Start/End: Original strand, 35075847 - 35075954
Alignment:
Q  422 taagaaattaaagataaaaatatttt-gttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaatt 520  Q
    ||||||| |||||||| ||| ||||| |||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||||||||    
T  35075847 taagaaactaaagatataaacatttttgttgaaaattgtgcattcaatattctagaaatttaaaatcttatcttttcaagacaaaaattatgatttaatt 35075946  T
Q  521 ccattttt 528  Q
    | ||||||    
T  35075947 ctattttt 35075954  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 431 - 516
Target Start/End: Complemental strand, 31559181 - 31559096
Alignment:
Q  431 aaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgattt 516  Q
    ||||||| ||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||| || |||||||||||||||| ||||    
T  31559181 aaagatagaaacattttgttggacattgtgcatttagtattttagcaatttaaaattttatgttttcaagacataatttattattt 31559096  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 5150835 - 5150888
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatatttt 473  Q
    ||||||||  ||||||| |||||||||| ||| |||||||||||||||||||||    
T  5150835 gttaagaagctaaagattaaaatattttcttgaaaattatgcattcaatatttt 5150888  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 420 - 527
Target Start/End: Original strand, 10020725 - 10020829
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||| |||||||| ||| ||||||||||   |||||  | ||||| || |||||||||||||||| ||||| || ||||||||  |||| || ||||||    
T  10020725 gttaataaattaaatatagaaatattttg---gaaatcgttcattctatgttttagaaatttaaaaatttatattttcaagacaatatttttgttttaat 10020821  T
Q  520 tccatttt 527  Q
    ||||||||    
T  10020822 tccatttt 10020829  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 528
Target Start/End: Original strand, 7802030 - 7802090
Alignment:
Q  467 atattttagaaatttaaaattttatcttatcaagacataatttatgatttaattccattttt 528  Q
    |||||||||||||||||||||||||||| | |||||| |||||    |||||||||||||||    
T  7802030 atattttagaaatttaaaattttatctt-ttaagacaaaatttgcattttaattccattttt 7802090  T

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Target: scaffold0402 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 421 - 503
Target Start/End: Original strand, 2978 - 3060
Alignment:
Q  421 ttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagaca 503  Q
    ||||||||  ||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||| | ||||||| ||||||||    
T  2978 ttaagaaaccaaagatataaacattttgttggaaattgtgcattcaatattttagaactttaaagtcttatcttttcaagaca 3060  T

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Target: scaffold1786 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 365 - 473
Alignment:
Q  420 gttaagaaattaaagataaaaatattttgttggaaattatgcattcaatattttagaaatttaaaattttatcttatcaagacataatttatgatttaat 519  Q
    ||||||| |||||| ||  ||||||||||||  ||||| |||||| ||||||||| || |||||||| |||| || | |||| | |||||||  ||||||    
T  365 gttaagatattaaaaattgaaatattttgttcaaaattgtgcatttaatattttaaaattttaaaatcttatatttttaagataaaatttattttttaat 464  T
Q  520 tccattttt 528  Q
    | |||||||    
T  465 ttcattttt 473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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