View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_18 (Length: 499)

Name: NF0847_low_18
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_18
NF0847_low_18
[»] chr3 (2 HSPs)
chr3 (270-489)||(12088054-12088273)
chr3 (65-250)||(12088452-12088639)
[»] chr5 (3 HSPs)
chr5 (256-324)||(24562825-24562893)
chr5 (256-324)||(24603859-24603927)
chr5 (284-339)||(17445945-17446000)
[»] chr6 (2 HSPs)
chr6 (256-313)||(8885819-8885876)
chr6 (256-339)||(977343-977426)
[»] chr1 (1 HSPs)
chr1 (299-437)||(20410110-20410244)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 270 - 489
Target Start/End: Complemental strand, 12088273 - 12088054
Alignment:
Q  270 aaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttgatagtaattgatcttgtgaatgatgtgtat 369  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  12088273 aaaccgataccagtatatatataggtgataggaaagagttgcattctcgtatatacatgatgatgttttgatagtaattgatgttgtgaatgatgtgtat 12088174  T
Q  370 gaacgttgatgctaatggtgaaatgattgtatgctgttgttattttatgttgcttcatatgttctgatcatatgttctgaaatgtattttcatccctttg 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  12088173 gaacgttgatgctaatggtgaaatgattgtatgctgttgttattttatgttgtttcatctgttctgatcatatgttttgaaatgtattttcacccctttg 12088074  T
Q  470 tcgttgttgtgtgttctgtg 489  Q
    ||||||||||||||| ||||    
T  12088073 tcgttgttgtgtgttttgtg 12088054  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 12088639 - 12088452
Alignment:
Q  65 ttgatgattattaatgatgagaaatgaatattacggtgataataaatggtgaagttaaataaaagtcttagggtgatgaacatttgtgatgaattgttgt 164  Q
    ||||||||||||  |||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  12088639 ttgatgattattggtgatgataaattaatattacggtgataataaatggtgatgctaaataaaagtcttagggtgatgaatatttgtgatgaattgttgt 12088540  T
Q  165 tgtctatatatggtgagtcttcatgcatcat--cataattagaattcaggtgatgattcgtgatgtgttgtattgctcaggaatataa 250  Q
    ||| |||||||||||||||||||||||||||  |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||    
T  12088539 tgtttatatatggtgagtcttcatgcatcataacataattagaattttggtgatgattggtgatgtgttgtattgctcaggaacataa 12088452  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24562893 - 24562825
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata 324  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||  |||||||||    
T  24562893 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24562825  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24603927 - 24603859
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata 324  Q
    |||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||||||  |||||||||    
T  24603927 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24603859  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 17446000 - 17445945
Alignment:
Q  284 atgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttg 339  Q
    |||||||| |||| ||||||||||||||||  |||||||||| ||||||| |||||    
T  17446000 atgcatatgggtgttaggaaagagttgcatcttcgcatatacatgatgatattttg 17445945  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 8885876 - 8885819
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcat 313  Q
    |||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||||    
T  8885876 attttggtgagtagagaccggtaccggtatgcatatgggtgataggaaggagttgcat 8885819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 977426 - 977343
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgttttg 339  Q
    |||||| |||||||| | ||||||||| ||||||||||||| |||||||||||| |||  | |||||||| | ||||| |||||    
T  977426 attttggtgagtagagatcgataccggcatgcatataggtgttaggaaagagttacatctttgcatatacatcatgatattttg 977343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 437
Target Start/End: Original strand, 20410110 - 20410244
Alignment:
Q  299 aggaaagagttgcattctcgcatatacgtgatgatgttttgatagtaattgatcttgtgaatgatgtgtatgaacgttgatgctaatggtgaaatgattg 398  Q
    ||||||||||| ||| || |||||||| ||||||||||| ||||||||||||  |||||||||||||| | ||  ||  || |||||| ||  ||||||     
T  20410110 aggaaagagttccat-ctagcatatacatgatgatgttt-gatagtaattgacattgtgaatgatgtgcacgagtgtgaatactaatgatg--atgattt 20410205  T
Q  399 tatgctgttgttattttatgttgcttcatatgttctgat 437  Q
    |||| ||||||||||| ||||||||| || | |||||||    
T  20410206 tatgttgttgttatttcatgttgctttatctattctgat 20410244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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