View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_2 (Length: 796)

Name: NF0847_low_2
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_2
NF0847_low_2
[»] chr6 (2 HSPs)
chr6 (143-796)||(8152030-8152684)
chr6 (144-198)||(8134122-8134176)
[»] chr3 (1 HSPs)
chr3 (691-785)||(47957133-47957227)
[»] chr7 (1 HSPs)
chr7 (629-667)||(19835436-19835474)
[»] chr1 (2 HSPs)
chr1 (629-667)||(36497137-36497175)
chr1 (629-667)||(50741462-50741500)
[»] scaffold0252 (1 HSPs)
scaffold0252 (629-661)||(16608-16640)
[»] chr8 (2 HSPs)
chr8 (629-667)||(25029700-25029738)
chr8 (634-667)||(27707909-27707942)
[»] chr4 (1 HSPs)
chr4 (629-667)||(54857124-54857162)
[»] chr2 (1 HSPs)
chr2 (629-670)||(35819408-35819449)


Alignment Details
Target: chr6 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 143 - 796
Target Start/End: Original strand, 8152030 - 8152684
Alignment:
Q  143 ccatcataggcaaactatcctatgaaattttgaattactttgtgcaatagagggacnnnnnnnnnnggttcttccgacctannnnnnnaatcaaaagcat 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||| |||||||||       ||||||||||||    
T  8152030 ccatcataggcaaactatcctatgaaattttgaattactttgtgcaatagagggacaaaaaaaataggttcgtccgacctatttttt-aatcaaaagcat 8152128  T
Q  243 attcacgttgaattgtcccccgattctaattgcatgcatagttttgttacatttcatgctaattatgctagaaactgacttctacctcccactcaatttt 342  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152129 attcacgttgaattgtcccccgattctaattgcattcatagttttgttacatttcatgctaattatgctagaaactgacttctacctcccactcaatttt 8152228  T
Q  343 tatgaagtcttaaaacataggaccctagccactttctgcacataatttttggttgtgtgtccaccttttttccctcttttttatacgacgttttcggatt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8152229 tatgaagtcttaaaacataggaccctagccactttctgcacataatttttggttgtgtgtccaccttttttccctcttttttatacgacattttcggatt 8152328  T
Q  443 atacctagtccaatttgtaagtgatatacactcaaaccctagccttatttcatttcctcttcctcatatacattgctgccgctttgcttctcattctcaa 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152329 atacctagtccaatttgtaagtgatatacactcaaaccctagccttatttcatttcctcttcctcatatacattgctgccgctttgcttctcattctcaa 8152428  T
Q  543 tctgtgtcatgttcttctcccttcaatctctctccccatgcatgtcaaaat--tatacaagtttgtttaatgtaatttgttnnnnnnntaatcaaatatc 640  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||    
T  8152429 tctgtgtcatgttcttctcccttcaatctctctccccatgcatgtcaaaattatatacaagtttgtttaatgtaatttgttaaaaaaataatcaaatatc 8152528  T
Q  641 agtgaccgctatttgtcatacggctatcccggtatccaagattgactacaaagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgc 740  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8152529 agtgaccgctatttgtcatacggctatcccgctatccaagattgactacaaagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgc 8152628  T
Q  741 tactcacactcacattaaaggcctaggtcttgaggttcgttctctgctcctcctca 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  8152629 tactcacactcacattaaaggcctaggtcttgaggttcgttctcttctcttcctca 8152684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 8134122 - 8134176
Alignment:
Q  144 catcataggcaaactatcctatgaaattttgaattactttgtgcaatagagggac 198  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||    
T  8134122 catcataggtaaactatcctttgaaattttgaattactttgtgcaatatagggac 8134176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 691 - 785
Target Start/End: Complemental strand, 47957227 - 47957133
Alignment:
Q  691 aagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgctactcacactcacattaaaggcctaggtcttgaggttcgttctct 785  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47957227 aagatgaaaattgaagaggttcagtcgacaacaaagaaacagcgtgttgctactcacactcacattaaaggcctaggtcttgaggtttgttctct 47957133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 19835436 - 19835474
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctat 667  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  19835436 taatcaaatatcagtgaccgctatttgtcatacagctat 19835474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 36497137 - 36497175
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctat 667  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  36497137 taatcaaatatcagtgaccgctatttgtcataccgctat 36497175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 50741462 - 50741500
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctat 667  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  50741462 taatcaaatatcggtgaccgctatttgtcataccgctat 50741500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 661
Target Start/End: Complemental strand, 16640 - 16608
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatac 661  Q
    |||||||||||||||||||||||||||||||||    
T  16640 taatcaaatatcagtgaccgctatttgtcatac 16608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 25029700 - 25029738
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctat 667  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  25029700 taatcaaatatccgtgaccgctatttgtcatactgctat 25029738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 667
Target Start/End: Complemental strand, 27707942 - 27707909
Alignment:
Q  634 aaatatcagtgaccgctatttgtcatacggctat 667  Q
    |||||||||||||||||||||||||||| |||||    
T  27707942 aaatatcagtgaccgctatttgtcataccgctat 27707909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 54857124 - 54857162
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctat 667  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  54857124 taatcaaatatctgtgaccgctatttgtcataccgctat 54857162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 670
Target Start/End: Original strand, 35819408 - 35819449
Alignment:
Q  629 taatcaaatatcagtgaccgctatttgtcatacggctatccc 670  Q
    |||||||||||| ||||||||||||||| |||| ||||||||    
T  35819408 taatcaaatatcggtgaccgctatttgtaataccgctatccc 35819449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 939 times since January 2019
Visitors: 6134