View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_20 (Length: 487)

Name: NF0847_low_20
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_20
NF0847_low_20
[»] chr3 (16 HSPs)
chr3 (29-457)||(48991531-48991956)
chr3 (350-409)||(41633361-41633420)
chr3 (355-411)||(32069155-32069211)
chr3 (374-410)||(34414793-34414829)
chr3 (351-410)||(46030992-46031051)
chr3 (375-412)||(21862182-21862219)
chr3 (381-410)||(40321078-40321107)
chr3 (368-412)||(2719487-2719531)
chr3 (369-409)||(5292530-5292570)
chr3 (259-299)||(28409266-28409306)
chr3 (349-401)||(30443893-30443945)
chr3 (382-410)||(33883759-33883787)
chr3 (376-412)||(34924545-34924581)
chr3 (366-410)||(50946295-50946339)
chr3 (376-412)||(51206505-51206541)
chr3 (220-299)||(53424218-53424298)
[»] chr2 (12 HSPs)
chr2 (221-299)||(16510305-16510384)
chr2 (368-410)||(15978004-15978046)
chr2 (368-410)||(3227692-3227734)
chr2 (368-410)||(35379025-35379067)
chr2 (346-410)||(10567054-10567118)
chr2 (374-410)||(11488302-11488338)
chr2 (349-412)||(32364738-32364801)
chr2 (368-410)||(7928308-7928350)
chr2 (369-415)||(28677663-28677709)
chr2 (220-296)||(17324841-17324918)
chr2 (382-410)||(1493522-1493550)
chr2 (366-410)||(19333334-19333378)
[»] chr8 (14 HSPs)
chr8 (349-417)||(28769341-28769409)
chr8 (349-403)||(10120756-10120810)
chr8 (349-410)||(11569466-11569527)
chr8 (349-412)||(8062329-8062392)
chr8 (374-412)||(25869273-25869311)
chr8 (368-410)||(42215091-42215133)
chr8 (372-409)||(8499311-8499348)
chr8 (349-410)||(27028831-27028892)
chr8 (368-409)||(27754423-27754464)
chr8 (373-410)||(30918137-30918174)
chr8 (368-412)||(8066847-8066891)
chr8 (374-410)||(20672775-20672811)
chr8 (382-410)||(30389132-30389160)
chr8 (368-408)||(44236834-44236874)
[»] chr1 (21 HSPs)
chr1 (366-410)||(6292510-6292554)
chr1 (218-297)||(48536289-48536368)
chr1 (368-410)||(10199417-10199459)
chr1 (374-410)||(15361065-15361101)
chr1 (368-412)||(28689459-28689503)
chr1 (349-412)||(27140478-27140541)
chr1 (366-409)||(44815313-44815356)
chr1 (368-410)||(1565544-1565586)
chr1 (349-403)||(7472311-7472365)
chr1 (368-410)||(11893602-11893644)
chr1 (368-410)||(37593693-37593735)
chr1 (368-410)||(38503474-38503516)
chr1 (218-279)||(40145948-40146010)
chr1 (368-410)||(46252691-46252733)
chr1 (368-410)||(47877128-47877170)
chr1 (349-406)||(4700079-4700136)
chr1 (349-410)||(7137007-7137068)
chr1 (373-410)||(31517749-31517786)
chr1 (349-410)||(34290236-34290297)
chr1 (388-420)||(6659553-6659585)
chr1 (369-413)||(26916221-26916265)
[»] chr7 (10 HSPs)
chr7 (368-411)||(46082055-46082098)
chr7 (368-410)||(7244699-7244741)
chr7 (374-412)||(24363608-24363646)
chr7 (382-412)||(47134764-47134794)
chr7 (383-420)||(39281003-39281040)
chr7 (348-409)||(44821958-44822019)
chr7 (368-408)||(25596052-25596092)
chr7 (374-410)||(27378837-27378873)
chr7 (377-409)||(30837455-30837487)
chr7 (368-408)||(43250710-43250750)
[»] chr4 (15 HSPs)
chr4 (369-412)||(33534176-33534219)
chr4 (366-409)||(53792588-53792631)
chr4 (368-402)||(4500865-4500899)
chr4 (368-417)||(53673660-53673709)
chr4 (368-408)||(2592320-2592360)
chr4 (377-412)||(49219167-49219202)
chr4 (239-312)||(1985931-1986005)
chr4 (374-412)||(5131257-5131295)
chr4 (368-410)||(17884087-17884129)
chr4 (374-415)||(47970321-47970362)
chr4 (374-410)||(7694019-7694055)
chr4 (376-412)||(8468975-8469011)
chr4 (368-412)||(19304945-19304989)
chr4 (374-426)||(19429734-19429786)
chr4 (382-410)||(25332808-25332836)
[»] chr6 (10 HSPs)
chr6 (363-412)||(3528817-3528866)
chr6 (368-409)||(7785754-7785795)
chr6 (377-417)||(2167160-2167200)
chr6 (377-417)||(2178793-2178833)
chr6 (377-412)||(9027606-9027641)
chr6 (349-408)||(10616552-10616611)
chr6 (374-412)||(27909645-27909683)
chr6 (376-417)||(4006741-4006782)
chr6 (349-410)||(9109260-9109321)
chr6 (382-410)||(31420978-31421006)
[»] scaffold0254 (1 HSPs)
scaffold0254 (377-417)||(3501-3541)
[»] chr5 (9 HSPs)
chr5 (374-426)||(8177525-8177577)
chr5 (373-408)||(10272442-10272477)
chr5 (346-412)||(7319015-7319081)
chr5 (373-410)||(7907905-7907942)
chr5 (371-412)||(10303818-10303859)
chr5 (350-410)||(4014433-4014493)
chr5 (349-409)||(11707055-11707115)
chr5 (350-410)||(17258892-17258952)
chr5 (220-299)||(38684283-38684363)
[»] scaffold0459 (1 HSPs)
scaffold0459 (222-299)||(10735-10813)
[»] scaffold0366 (1 HSPs)
scaffold0366 (222-299)||(12042-12120)


Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 29 - 457
Target Start/End: Original strand, 48991531 - 48991956
Alignment:
Q  29 attttaatctcgttctttctatttaatttaagttttgtttggataaatagcttatttatgtgtttataggacaaatacttgttatgcaagtgcttatcta 128  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48991531 attttagtctcgttctttctatttaattgaagttttgtttggataaatagcttatttatgtgtttataggacaaatacttgttatgcaagtgcttatcta 48991630  T
Q  129 tgatctatttttatcaaaaatgataaaataaaccctaaggctcgggatcttggagtgtgcttctttcaaagtctcatgtccaatgctcgtagtgccaatt 228  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  48991631 tgatctatttttatcaaaaatgataaaataaacc-taaggctcgggatcttggagtgtgcttctctcaaagtctcatgtccaatgctcgtagtgccaatg 48991729  T
Q  229 tatgtgggctagtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattggtttctcggattagttagtcctaagtcggat 328  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  48991730 tatgtgggctagtccatacagagtaagccctggctttaaatgggtccccactagtgaacagtgggattggtttcccggattagttggtcctaagtcggat 48991829  T
Q  329 actgagtt-nnnnnnntgtattataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatggaaatattatgagctgc 427  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  48991830 actgagttaaaaaaaatgtattataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatggaaatattatga---gc 48991926  T
Q  428 tggttccaaacagaccataatcttttgctg 457  Q
    ||||||||||||||||||||||||||||||    
T  48991927 tggttccaaacagaccataatcttttgctg 48991956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 41633361 - 41633420
Alignment:
Q  350 ataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    |||||||||||  || | ||||||||||||| ||||||||||||||||||||||| ||||    
T  41633361 ataagctgttttcatcagctattttggagagcttatgaaaataagctgaaaacaatttat 41633420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 32069155 - 32069211
Alignment:
Q  355 ctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatgg 411  Q
    |||||| ||| | |||| |||||||||||||||||||||||| |||| |||||||||    
T  32069155 ctgttttaataagctatcttggagagattatgaaaataagctaaaaagaacttatgg 32069211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 34414829 - 34414793
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| |||||||||||||||||||||||||||||    
T  34414829 tggagagtttatgaaaataagctgaaaacaacttatg 34414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 46030992 - 46031051
Alignment:
Q  351 taagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||| ||| |||||| |||||||  |||| ||||||||||||||||| ||||||    
T  46030992 taagctgtttcaataaactatcttggagaacttattaaaataagctgaaaacagcttatg 46031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 21862219 - 21862182
Alignment:
Q  375 ggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  21862219 ggagagcttatggaaataagctgaaaacaacttatgga 21862182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 410
Target Start/End: Complemental strand, 40321107 - 40321078
Alignment:
Q  381 attatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||||||||||||||||||||    
T  40321107 attatgaaaataagctgaaaacaacttatg 40321078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 2719487 - 2719531
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||| |||||||  ||||||||||||||||| |||||||||||||    
T  2719487 ctatcttggagaacttatgaaaataagctgagaacaacttatgga 2719531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 5292570 - 5292530
Alignment:
Q  369 tattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  5292570 tattatggagagcttatggaaataagctgaaaacaacttat 5292530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 28409306 - 28409266
Alignment:
Q  259 tggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    |||||| || |||||||||||||||| ||||||||||||||    
T  28409306 tggcttcaattgggcccccactagtggacggtgggattggt 28409266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 30443893 - 30443945
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaa 401  Q
    ||||||||||||  || |||||| |||||||  ||||||||||||||||||||    
T  30443893 tataagctgtttttataaactatattggagaacttatgaaaataagctgaaaa 30443945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 33883787 - 33883759
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||||||||||||||||    
T  33883787 ttatgaaaataagctgaaaacaacttatg 33883759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 34924581 - 34924545
Alignment:
Q  376 gagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  34924581 gagagcttatgaaaataagctgaaaacaacatatgga 34924545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 50946339 - 50946295
Alignment:
Q  366 aactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||    
T  50946339 aactattttggagaacttatgaaaataagctgagaacaatttatg 50946295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 51206541 - 51206505
Alignment:
Q  376 gagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  51206541 gagagcttatgaaaataagctgaaaacaacttttgga 51206505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 53424298 - 53424218
Alignment:
Q  220 gtgccaatttatgtgggcta-gtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    ||||||||||  |||||||| |||||||||||||   |  |||||||||| |||||||| | ||||| |||||||||||||    
T  53424298 gtgccaatttcggtgggctaagtccatacagagtttgctatggctttaaacgggcccccgcaagtgagcggtgggattggt 53424218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 16510305 - 16510384
Alignment:
Q  221 tgccaatttatgtgggctagtccatacagagtaatcc-ctggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    ||||||||| |||||||||||||||||| || ||| | |||||||||||||| |||||||||||| ||| ||||||||||    
T  16510305 tgccaatttctgtgggctagtccatacaaagcaatgctctggctttaaatggccccccactagtggacgatgggattggt 16510384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 15978004 - 15978046
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  15978004 ctattttggagagattatgaaaataagctgaaaacaatttatg 15978046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 3227734 - 3227692
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  3227734 ctattttggagagattttgaaaataagctgaaaacaatttatg 3227692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 35379067 - 35379025
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatg 35379025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 10567054 - 10567118
Alignment:
Q  346 tattataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| ||||||  || ||||||| ||||||| || ||||||| ||||||||||||||||||    
T  10567054 tattataaactgtttccataaactattctggagagcttgtgaaaattagctgaaaacaacttatg 10567118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 11488302 - 11488338
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||| |||||||||||||||||||||||    
T  11488302 tggagagattatgcaaataagctgaaaacaacttatg 11488338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 32364801 - 32364738
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||||||||||||  | |||||| || ||||  ||||||||||||||||||||||||| |||||    
T  32364801 tataagctgtttacgtaaactatcttagagatcttatgaaaataagctgaaaacaactcatgga 32364738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 7928350 - 7928308
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  7928350 ctatcttggagaacttatgaaaataagctgaaaacaacttatg 7928308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 28677709 - 28677663
Alignment:
Q  369 tattttggagagattatgaaaataagctgaaaacaacttatggaaat 415  Q
    |||||||||||| ||||| |||||||| |||||||||||||| ||||    
T  28677709 tattttggagagcttatggaaataagccgaaaacaacttatgaaaat 28677663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 17324841 - 17324918
Alignment:
Q  220 gtgccaatttatgtgggcta-gtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggatt 296  Q
    ||||||||||  |||||||| ||||||||||||    | |||||||||||||||||||||| ||||  ||||||||||    
T  17324841 gtgccaatttcggtgggctaagtccatacagagcttgctctggctttaaatgggcccccacaagtgggcggtgggatt 17324918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 1493550 - 1493522
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||||||||||||||||    
T  1493550 ttatgaaaataagctgaaaacaacttatg 1493522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 19333378 - 19333334
Alignment:
Q  366 aactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||| |||||||| ||||||||||||||||| |||| ||||||    
T  19333378 aactatattggagagcttatgaaaataagctgagaacagcttatg 19333334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 417
Target Start/End: Complemental strand, 28769409 - 28769341
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    ||||||||||||  || | ||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggacatat 28769341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 10120756 - 10120810
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaaca 403  Q
    ||||||||||||| || |||||| |||||||  ||||||||||||||||||||||    
T  10120756 tataagctgtttacattaactatattggagaacttatgaaaataagctgaaaaca 10120810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 11569527 - 11569466
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||  || | ||||  |||||||||| ||||||||||||||||||||||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatg 11569466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 8062329 - 8062392
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||||||||  || | |||| || ||||||||||| |||||||||||||||| ||||||||    
T  8062329 tataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatgga 8062392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 25869311 - 25869273
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  25869311 tggagagtttatggaaataagctgaaaacaacttatgga 25869273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 42215133 - 42215091
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||| ||||| |||||||||||||||||||||||    
T  42215133 ctatcttggagagcttatgtaaataagctgaaaacaacttatg 42215091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 8499311 - 8499348
Alignment:
Q  372 tttggagagattatgaaaataagctgaaaacaacttat 409  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  8499311 tttggagaaattgtgaaaataagctgaaaacaacttat 8499348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 27028831 - 27028892
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||  || | |||| |||||||| |||||||||||||||||||| | ||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 27754423 - 27754464
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  27754423 ctattttggagagcttatgaaaataagctgaacgcaacttat 27754464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 30918137 - 30918174
Alignment:
Q  373 ttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  30918137 ttggagagcttatggaaataagctgaaaacaacttatg 30918174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 8066891 - 8066847
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||    
T  8066891 ctatcttgtagagtttattaaaataagctgaaaacaacttatgga 8066847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 20672775 - 20672811
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  20672775 tggagagcttatgaaaataagctgaaaacagcttatg 20672811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 30389132 - 30389160
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||||||||||||||||    
T  30389132 ttatgaaaataagctgaaaacaacttatg 30389160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 44236874 - 44236834
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaactta 408  Q
    |||| |||||||| |||||||||||||||||||| ||||||    
T  44236874 ctatattggagagcttatgaaaataagctgaaaataactta 44236834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 6292510 - 6292554
Alignment:
Q  366 aactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||    
T  6292510 aactattttggagagcttatgaaaataagctgaaaacagcttatg 6292554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 48536368 - 48536289
Alignment:
Q  218 tagtgccaatttatgtgggctagtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattg 297  Q
    |||||| ||||| ||||||||||||||||| |||      |||||||||||||||||||||||| || ||||||||||||    
T  48536368 tagtgcaaatttttgtgggctagtccataccgagcttgttctggctttaaatgggcccccactaatggacggtgggattg 48536289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 10199459 - 10199417
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| ||||| |||||||||||||||||||||||||||||    
T  10199459 ctattttagagagcttatgaaaataagctgaaaacaacttatg 10199417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 410
Target Start/End: Original strand, 15361065 - 15361101
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15361065 tggagagcttatgaaaataagctgaaaacaacttatg 15361101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 28689503 - 28689459
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  28689503 ctatcttggaaagcttatgaaaataagctgaaaacaacttatgga 28689459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Original strand, 27140478 - 27140541
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||||||||  || | ||||  ||||||| ||||| |||||||||||||||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatgga 27140541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 44815356 - 44815313
Alignment:
Q  366 aactattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    ||||||||||||||| ||||| ||||||||||||||||| ||||    
T  44815356 aactattttggagagcttatggaaataagctgaaaacaatttat 44815313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 1565586 - 1565544
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||| | |||||||||||||||||||| ||||||    
T  1565586 ctattttggagagctcatgaaaataagctgaaaacagcttatg 1565544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 7472311 - 7472365
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaaca 403  Q
    ||||||||||||  || | |||| |||||||| ||||||||||||||||||||||    
T  7472311 tataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaaca 7472365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 11893644 - 11893602
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| |||| ||||| |||||||||||||||||||||||    
T  11893644 ctattttgaagagtttatggaaataagctgaaaacaacttatg 11893602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 37593735 - 37593693
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| |||| |||||||||||||||||||||| ||||||    
T  37593735 ctattttgaagagcttatgaaaataagctgaaaacagcttatg 37593693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 38503516 - 38503474
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  38503516 ctatcttggagaacttatgaaaataagctgaaaacaacttatg 38503474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 40146010 - 40145948
Alignment:
Q  218 tagtgccaatttatgtgggct-agtccatacagagtaatccctggctttaaatgggcccccac 279  Q
    ||||||||||||||||||||| |||||||||||||    | ||| ||||||||||||||||||    
T  40146010 tagtgccaatttatgtgggctaagtccatacagagcttgctctgactttaaatgggcccccac 40145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 46252733 - 46252691
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||| |||||||||||| ||||||||||||||||    
T  46252733 ctatcttggagagcttatgaaaataacctgaaaacaacttatg 46252691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 47877128 - 47877170
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||| |||| || |||||||||||||||||||||||||||||    
T  47877128 ctattatggaaagcttatgaaaataagctgaaaacaacttatg 47877170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 4700136 - 4700079
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaact 406  Q
    ||||| ||||||  || ||||||  ||||||| |||||||||||||||||||||||||    
T  4700136 tataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 7137068 - 7137007
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||  || | |||| |||||||  |||||||||||||||||||| ||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatg 7137007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 31517786 - 31517749
Alignment:
Q  373 ttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  31517786 ttggagagcttatgaaaataagctgaaaacagcttatg 31517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 34290236 - 34290297
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||  || | |||| ||| |||  |||||||||||||||||||||||||||||    
T  34290236 tataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatg 34290297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 6659553 - 6659585
Alignment:
Q  388 aaataagctgaaaacaacttatggaaatattat 420  Q
    ||||||||||||||||||||||||| |||||||    
T  6659553 aaataagctgaaaacaacttatggacatattat 6659585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 413
Target Start/End: Original strand, 26916221 - 26916265
Alignment:
Q  369 tattttggagagattatgaaaataagctgaaaacaacttatggaa 413  Q
    |||| ||||||| ||||| |||||||||| |||||||||||||||    
T  26916221 tattctggagagcttatggaaataagctggaaacaacttatggaa 26916265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 46082055 - 46082098
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatgg 411  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  46082055 ctattctggagagcttatgaaaataagctgaaaacaacttatgg 46082098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 7244699 - 7244741
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  7244699 ctatattggagagcttatgaaaataagctgaaaacaacttatg 7244741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 24363646 - 24363608
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  24363646 tggagaggttatggaaataagctgaaaacaacttatgga 24363608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Complemental strand, 47134794 - 47134764
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatgga 412  Q
    |||||||||||||||||||||||||||||||    
T  47134794 ttatgaaaataagctgaaaacaacttatgga 47134764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 39281003 - 39281040
Alignment:
Q  383 tatgaaaataagctgaaaacaacttatggaaatattat 420  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  39281003 tatggaaataagctgaaaacaacttatggacatattat 39281040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 44821958 - 44822019
Alignment:
Q  348 ttataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    |||||||||||||  || | ||||| ||||||  ||||||||||||| ||||||||||||||    
T  44821958 ttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaacaacttat 44822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 25596052 - 25596092
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaactta 408  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  25596052 ctatcttggagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 27378873 - 27378837
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  27378873 tggagagcttatgaaaataaactgaaaacaacttatg 27378837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 30837455 - 30837487
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttat 409  Q
    |||||||||||||| ||||||||||||||||||    
T  30837455 agagattatgaaaaaaagctgaaaacaacttat 30837487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 43250750 - 43250710
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaactta 408  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  43250750 ctattttggagagcttatgaatataaactgaaaacaactta 43250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 412
Target Start/End: Complemental strand, 33534219 - 33534176
Alignment:
Q  369 tattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  33534219 tatttttgagagcttatgaaaataagctgaaaacaacttatgga 33534176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 53792588 - 53792631
Alignment:
Q  366 aactattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    |||||| |||||||| ||||||||||||||||||||||||||||    
T  53792588 aactatcttggagagtttatgaaaataagctgaaaacaacttat 53792631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 402
Target Start/End: Original strand, 4500865 - 4500899
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaac 402  Q
    |||||||||||||||||||||||||||||||||||    
T  4500865 ctattttggagagattatgaaaataagctgaaaac 4500899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 53673709 - 53673660
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    |||| |||||||| ||||| ||||||||||||||||||||||||| ||||    
T  53673709 ctatcttggagagcttatgtaaataagctgaaaacaacttatggacatat 53673660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 2592360 - 2592320
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaactta 408  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  2592360 ctattttggagagcttatggaaataagctgaaaacaactta 2592320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Original strand, 49219167 - 49219202
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||||||||| |||||||||||||||||||||||||    
T  49219167 agagattatggaaataagctgaaaacaacttatgga 49219202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 1985931 - 1986005
Alignment:
Q  239 agtccatacagagtaatccctggctttaaatgg-gcccccactagtgaacggtgggattggtttctcggattagt 312  Q
    |||||||||||||||| | ||||||||||| || |||||||| ||||  |||||| |||||| | ||||||||||    
T  1985931 agtccatacagagtaaactctggctttaaacggagcccccacaagtgggcggtggaattggtctatcggattagt 1986005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 5131295 - 5131257
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  5131295 tggagagcttatggaaataagctgaaaacaacttatgga 5131257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 17884087 - 17884129
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||| |||||||| |||||||||| ||||||||||||||||||    
T  17884087 ctatattggagagcttatgaaaattagctgaaaacaacttatg 17884129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 47970321 - 47970362
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatggaaat 415  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||    
T  47970321 tggagagcttatgcaaataagctgaaaacaatttatggaaat 47970362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 7694055 - 7694019
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  7694055 tggagagtttatggaaataagctgaaaacaacttatg 7694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 8468975 - 8469011
Alignment:
Q  376 gagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  8468975 gagagcttatgaaaataatctgaaaacaacttatgga 8469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 19304945 - 19304989
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||||||||| | ||| ||| |||||||||||||||||||||    
T  19304945 ctattttggagagttaatggaaacaagctgaaaacaacttatgga 19304989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 19429734 - 19429786
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatggaaatattatgagctg 426  Q
    ||||||| ||||| |||||||||||||||| ||||||| ||| | ||||||||    
T  19429734 tggagagcttatggaaataagctgaaaacagcttatggcaatgtaatgagctg 19429786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 25332808 - 25332836
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||||||||||||||||    
T  25332808 ttatgaaaataagctgaaaacaacttatg 25332836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 3528817 - 3528866
Alignment:
Q  363 atgaactattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||||| |||||||| ||||||||||||| ||||||||| |||||||    
T  3528817 atgaactatcttggagagcttatgaaaataagatgaaaacaagttatgga 3528866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 409
Target Start/End: Complemental strand, 7785795 - 7785754
Alignment:
Q  368 ctattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  7785795 ctattttggagagcttatggaaataagctgaaaacaacttat 7785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 2167200 - 2167160
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  2167200 agagattatggaaataagctgaaaacaacttatggacatat 2167160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 2178833 - 2178793
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  2178833 agagattatggaaataagctgaaaacaacttatggacatat 2178793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Original strand, 9027606 - 9027641
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||| |||||||||||||||||||||||||||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatgga 9027641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 10616611 - 10616552
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaactta 408  Q
    ||||||| |||| ||| | ||||||||||||| |||| ||||||||||||| ||||||||    
T  10616611 tataagccgttttaataagctattttggagagcttataaaaataagctgaacacaactta 10616552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 412
Target Start/End: Complemental strand, 27909683 - 27909645
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  27909683 tggagagcttatggaaataagctgaaaacaacttatgga 27909645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 417
Target Start/End: Original strand, 4006741 - 4006782
Alignment:
Q  376 gagagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    ||||| |||||||||||||||||||| |||||||||| ||||    
T  4006741 gagaggttatgaaaataagctgaaaataacttatggacatat 4006782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 410
Target Start/End: Complemental strand, 9109321 - 9109260
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    ||||||||||||  || ||||| ||||||||   |||||||||||| |||||||||||||||    
T  9109321 tataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatg 9109260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 31420978 - 31421006
Alignment:
Q  382 ttatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||||||||||||||||||||    
T  31420978 ttatgaaaataagctgaaaacaacttatg 31421006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 3501 - 3541
Alignment:
Q  377 agagattatgaaaataagctgaaaacaacttatggaaatat 417  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  3501 agagattatggaaataagctgaaaacaacttatggacatat 3541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 426
Target Start/End: Complemental strand, 8177577 - 8177525
Alignment:
Q  374 tggagagattatgaaaataagctgaaaacaacttatggaaatattatgagctg 426  Q
    ||||||| |||||||||||| |||||||||||||||||| |||| || |||||    
T  8177577 tggagagcttatgaaaataacctgaaaacaacttatggacatatcataagctg 8177525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 408
Target Start/End: Complemental strand, 10272477 - 10272442
Alignment:
Q  373 ttggagagattatgaaaataagctgaaaacaactta 408  Q
    |||||||| |||||||||||||||||||||||||||    
T  10272477 ttggagagtttatgaaaataagctgaaaacaactta 10272442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 412
Target Start/End: Complemental strand, 7319081 - 7319015
Alignment:
Q  346 tattataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    |||||||| ||||||  || | |||| |||||||  ||||||||||||||||| |||||||||||||    
T  7319081 tattataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatgga 7319015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Original strand, 7907905 - 7907942
Alignment:
Q  373 ttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  7907905 ttggagagcttatgaaattaagctgaaaacaacttatg 7907942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 412
Target Start/End: Original strand, 10303818 - 10303859
Alignment:
Q  371 ttttggagagattatgaaaataagctgaaaacaacttatgga 412  Q
    ||||||| || ||||||||||||||||| |||||||||||||    
T  10303818 ttttggaaagcttatgaaaataagctgacaacaacttatgga 10303859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 4014493 - 4014433
Alignment:
Q  350 ataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||  || | |||| |||||||  |||||||||||||||||||||| ||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttatg 4014433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 11707055 - 11707115
Alignment:
Q  349 tataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttat 409  Q
    ||||||||||||  || | |||| ||| |||| || |||||||||||||||||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttat 11707115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 17258952 - 17258892
Alignment:
Q  350 ataagctgtttaaatgaactattttggagagattatgaaaataagctgaaaacaacttatg 410  Q
    |||||||||||  || ||||||  || |||| |||||||||||||||||||||| ||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatg 17258892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 38684283 - 38684363
Alignment:
Q  220 gtgccaatttatgtgggcta-gtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    ||||||||||  |||||||| ||||||||||||    | ||||||||||| |||||||| | ||||| |||||||||||||    
T  38684283 gtgccaatttcggtgggctaagtccatacagagcttgctctggctttaaacgggcccccgcaagtgagcggtgggattggt 38684363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 10813 - 10735
Alignment:
Q  222 gccaatttatgtgggcta-gtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    ||||||||  |||||||| ||||||||||||    | ||||||||||||||| |||||| |||| ||||||||||||||    
T  10813 gccaatttcggtgggctaagtccatacagagcttgctctggctttaaatggggccccacaagtggacggtgggattggt 10735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 12120 - 12042
Alignment:
Q  222 gccaatttatgtgggcta-gtccatacagagtaatccctggctttaaatgggcccccactagtgaacggtgggattggt 299  Q
    ||||||||  |||||||| ||||||||||||    | ||||||||||||||| |||||| |||| ||||||||||||||    
T  12120 gccaatttcggtgggctaagtccatacagagcttgctctggctttaaatggggccccacaagtggacggtgggattggt 12042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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