View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_22 (Length: 480)
Name: NF0847_low_22
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 32 - 468
Target Start/End: Complemental strand, 40004567 - 40004131
Alignment:
| Q |
32 |
attgtccactttaggattcattttaacattggaaatcatcaagggagttattgatctaagcctctctgcgaatcttgatatacacgacatgcttggttcc |
131 |
Q |
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| T |
40004567 |
attgtccactttaggattcattttaacattggaaatcatcaagggagttattgatctaagcctctctacgaatcttgatatacacgacatgcttggttcc |
40004468 |
T |
|
| Q |
132 |
gagttctgtgttctggttgctaaaaaagaggcagaaaggagaagctcaaataaaaatctgtagattgtgaaattgtggttagaagtctaagttttattat |
231 |
Q |
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| T |
40004467 |
gagttctgtgttctggttgctgaaaaagaggcagaaaggagaagctcaaataaaaatctgtagattgtgaaattgtggttagaagtctaagttttattat |
40004368 |
T |
|
| Q |
232 |
tcctttgctcatctgcaaatggtaaagaaaaggaaaggaatcattctgactgtagcaaatctttcttcaaccttgttcatattttgtagggtgccactaa |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40004367 |
tcctttgctcatctgcaaatggtaaagaaaaggaaaggaatcattctaactgtagcaaatctttcttcaaccttgttgatattttgtagggtgccactaa |
40004268 |
T |
|
| Q |
332 |
aagtttgatgaacttcnnnnnnnctgttaaagttcttggacctagaggagatgttggatgaactgtttttctgacttgcttttcaagattggcacctagc |
431 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40004267 |
aagtttgatgaacttctttttttctgttaaagttcttggacctagaggagatgttggatgaactgtttttctgacttgcttttcaagattggcacctagc |
40004168 |
T |
|
| Q |
432 |
agctcaattatgtatattctttgcttaatcttatatt |
468 |
Q |
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| T |
40004167 |
agctcaattctgtatattctttgcttaatcttatatt |
40004131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 36 - 239
Target Start/End: Original strand, 50242223 - 50242429
Alignment:
| Q |
36 |
tccactttaggattcattttaacattggaaatcatcaagggagttattgatctaagcctctctgcgaatcttgatatacacgacatgcttggttccgagt |
135 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50242223 |
tccactttaggattcattataacatcggaaatcatcaagggagttattgatctcagcctttctgcgaatcttgatatacacgacatgcttggttccgagt |
50242322 |
T |
|
| Q |
136 |
tctgtgttctggttgctaaaaaagaggcagaaaggagaagctcaaataaaaat---ctgtagattgtgaaattgtggttagaagtctaagttttattatt |
232 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| | |||||||||||| |
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| T |
50242323 |
tctgtgttctggttgccgaaaaagaggcagaaaggagaagctcaaataaaaagaagcggtagattgtgaaatcgtggttagaaagcgaagttttattatc |
50242422 |
T |
|
| Q |
233 |
cctttgc |
239 |
Q |
| |
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||||||| |
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|
| T |
50242423 |
cctttgc |
50242429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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