View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_26 (Length: 443)

Name: NF0847_low_26
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_26
NF0847_low_26
[»] chr7 (4 HSPs)
chr7 (224-350)||(44673948-44674074)
chr7 (97-228)||(44672655-44672786)
chr7 (134-348)||(26401699-26401913)
chr7 (227-339)||(8863992-8864104)
[»] chr8 (3 HSPs)
chr8 (134-352)||(9529544-9529762)
chr8 (233-340)||(36307811-36307918)
chr8 (236-337)||(13813385-13813486)
[»] chr3 (4 HSPs)
chr3 (349-436)||(12088706-12088794)
chr3 (236-339)||(44493397-44493500)
chr3 (278-339)||(4485702-4485763)
chr3 (279-340)||(19822718-19822779)
[»] chr1 (1 HSPs)
chr1 (230-340)||(38490676-38490786)
[»] chr4 (2 HSPs)
chr4 (193-352)||(12353379-12353538)
chr4 (206-336)||(28858987-28859117)
[»] chr6 (1 HSPs)
chr6 (284-352)||(18689563-18689631)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 224 - 350
Target Start/End: Original strand, 44673948 - 44674074
Alignment:
Q  224 ttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaatt 323  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44673948 ttaggcaccggaaagtatttaggtatgccgtctatgattaggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagattaaatt 44674047  T
Q  324 cttggagcagcaagtgtttgtccaagg 350  Q
    |||||||||||||||||||||||||||    
T  44674048 cttggagcagcaagtgtttgtccaagg 44674074  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 97 - 228
Target Start/End: Original strand, 44672655 - 44672786
Alignment:
Q  97 gtaaagaacaaatatagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtatt 196  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672655 gtaaagaacaaatatagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtatt 44672754  T
Q  197 actaatatattgggggttcgtgcagtgttagg 228  Q
     ||||||||||||| |||||||||||||||||    
T  44672755 gctaatatattgggcgttcgtgcagtgttagg 44672786  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 134 - 348
Target Start/End: Original strand, 26401699 - 26401913
Alignment:
Q  134 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 233  Q
    |||||||||||||| || ||||| ||||||||||| ||  |||||| |||||||||||||||||| || || || | ||| ||||| || ||||| ||||    
T  26401699 agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattacaaacattttagcggtccgtgctgttttaggtaccg 26401798  T
Q  234 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 333  Q
    | ||||||||||| ||||| ||||||||||||| | |  ||| |  ||| ||| |||||||||| || ||||| ||||||||||| || || ||||| ||    
T  26401799 gtaagtatttaggaatgccatctatgattgggatggatagaatagacacattttcttacattaaggaccgggtttggcaaagaattaactcatggagtag 26401898  T
Q  334 caagtgtttgtccaa 348  Q
    |||||||||||||||    
T  26401899 caagtgtttgtccaa 26401913  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 8864104 - 8863992
Alignment:
Q  227 ggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattctt 326  Q
    ||||| || |||||| |||||||||| || ||||| ||  ||||  | || ||||||||| |||| ||||| || || ||||||||||| ||||||||||    
T  8864104 ggcactggtaagtatctaggtatgccttccatgataggacggaataggacgaccaccttttcttatattaaggaccgtgtgtggcaaaggataaattctt 8864005  T
Q  327 ggagcagcaagtg 339  Q
    |||| ||||||||    
T  8864004 ggagtagcaagtg 8863992  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 134 - 352
Target Start/End: Original strand, 9529544 - 9529762
Alignment:
Q  134 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 233  Q
    |||||||||||||  || ||||| ||||||||||| ||  ||||||  |||||||||| |||||| || || || | ||||||||| || ||||| ||||    
T  9529544 agtttaccgaagttagaaattttctacagtaggaatgtgccagatgcattgaaaaacaatattacaaacattttagcggttcgtgctgttttaggtaccg 9529643  T
Q  234 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 333  Q
    | ||||||||||  ||||| ||||||||| ||||| |  |||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||| ||    
T  9529644 gcaagtatttagaaatgccatctatgattaggagggatagaacaaccacatttgcttacattaaggatcgagtttggcaaagaattaactcatggagtag 9529743  T
Q  334 caagtgtttgtccaaggca 352  Q
    |||||||||||||||||||    
T  9529744 caagtgtttgtccaaggca 9529762  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 36307918 - 36307811
Alignment:
Q  233 ggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagca 332  Q
    ||||||||||||||||||||||| ||||||||  | ||  ||||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| |    
T  36307918 ggaaagtatttaggtatgccgtccatgattggtcgtaatagaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagta 36307819  T
Q  333 gcaagtgt 340  Q
    | ||||||    
T  36307818 gtaagtgt 36307811  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 13813486 - 13813385
Alignment:
Q  236 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 335  Q
    ||||||||||||||||| || ||||||||  || |  | ||  |||| |||||||| || || || || |||||||||||||||||||||||||||||||    
T  13813486 aagtatttaggtatgccttccatgattggacgggataggacggccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggagcagca 13813387  T
Q  336 ag 337  Q
    ||    
T  13813386 ag 13813385  T

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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 349 - 436
Target Start/End: Complemental strand, 12088794 - 12088706
Alignment:
Q  349 ggcataattggtgtagttatatggacgtaaatggtggtggtgttaat-atatgaggtgagactattgttaattatgatgatattgttgg 436  Q
    ||||||| |||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||||||||    
T  12088794 ggcataactggtgtagttatatggacgtaaatggtggtggtggtgttaatatgaggtgagactattgttaattttgatgatattgttgg 12088706  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 339
Target Start/End: Original strand, 44493397 - 44493500
Alignment:
Q  236 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 335  Q
    ||||||||||| ||||||||||||||||| ||  |  |||||||||| |||||||| |||| ||| ||||||||||||   || ||||| ||||| ||||    
T  44493397 aagtatttaggcatgccgtctatgattggcagagatagaacaaccacatttgcttatattatagaccgggtgtggcaacatattaattcgtggagtagca 44493496  T
Q  336 agtg 339  Q
    ||||    
T  44493497 agtg 44493500  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 4485763 - 4485702
Alignment:
Q  278 accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtg 339  Q
    |||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||    
T  4485763 accacctttgcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtg 4485702  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 19822779 - 19822718
Alignment:
Q  279 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgt 340  Q
    |||| ||||| ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  19822779 ccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgt 19822718  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 340
Target Start/End: Complemental strand, 38490786 - 38490676
Alignment:
Q  230 accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga 329  Q
    |||||||||||||||||||||||||| ||||| ||  |  |  |||||||||| |||||||| ||||| ||||| ||||||||||  || ||||||||||    
T  38490786 accggaaagtatttaggtatgccgtccatgatcggtcgtgatagaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttgga 38490687  T
Q  330 gcagcaagtgt 340  Q
    | || ||||||    
T  38490686 gtagtaagtgt 38490676  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 352
Target Start/End: Original strand, 12353379 - 12353538
Alignment:
Q  193 tattactaatatattgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttac 292  Q
    ||||||| |||| ||||| || ||||| ||  | || |||||||||||| ||||  |||| || |||||||| ||| |||||||  | || ||||| |||    
T  12353379 tattactcatattttgggtgtacgtgcggtccttgggaccggaaagtatctaggcttgccttcaatgattggtagggaccgaactgcaacgtttgcatac 12353478  T
Q  293 attaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggca 352  Q
    ||||||||  |||||||||||| ||| ||||| ||||| || || |||||||| ||||||    
T  12353479 attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggca 12353538  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 28858987 - 28859117
Alignment:
Q  206 ttgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcggg 305  Q
    ||||| |||||||||||  | || || || ||||| |||||| |||| |||||||| || ||| |  |||||||||| ||||| || ||||||||||  |    
T  28858987 ttgggtgttcgtgcagttcttggaacaggtaagtacttaggtttgccatctatgatcggaagggatagaacaaccacgtttgcatatattaaagatcatg 28859086  T
Q  306 tgtggcaaagaataaattcttggagcagcaa 336  Q
    | ||||||| ||| ||||||||||| |||||    
T  28859087 tttggcaaaaaatcaattcttggagtagcaa 28859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 18689563 - 18689631
Alignment:
Q  284 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggca 352  Q
    |||||| ||||||||||  |||||||||||| ||| ||||| || || ||||| |||||||| ||||||    
T  18689563 tttgctaacattaaagacagggtgtggcaaaaaattaattcgtgaagtagcaaatgtttgtcgaaggca 18689631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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