View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_30 (Length: 421)

Name: NF0847_low_30
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_30
NF0847_low_30
[»] chr4 (2 HSPs)
chr4 (29-367)||(39391562-39391903)
chr4 (74-116)||(39410553-39410595)
[»] chr1 (2 HSPs)
chr1 (37-116)||(5505729-5505808)
chr1 (75-115)||(41060864-41060904)
[»] chr3 (1 HSPs)
chr3 (364-421)||(12088709-12088764)
[»] chr8 (1 HSPs)
chr8 (36-112)||(9488809-9488885)
[»] chr7 (2 HSPs)
chr7 (74-114)||(29898430-29898470)
chr7 (48-112)||(31720954-31721018)
[»] chr2 (1 HSPs)
chr2 (76-116)||(6811451-6811491)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 39391562 - 39391903
Alignment:
Q  29 acatagatcttgaaagcgatgattggggtagcataagcctcaacaaagattagttgaaatgtatatcattaggaaactaaacacatatataatgannnnn 128  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||  ||||||||||||||||||||||         
T  39391562 acatagatcttgaaagcgatgattggggtagcataaacctcgacaaagatcagttgaaatgtatatcattaaaaaactaaacacatatataatgattttt 39391661  T
Q  129 nng----atataattatatatgtttatgttggtttatgaatgtttgttaaatctgcatatgtatacatgcattttctgttgtttggtagagtgtggttgg 224  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||    
T  39391662 tttttttatataattatatatgtttatgttggtttatgaatgtttgttaaatctgcatatgtatacatgcattttctgtttttcggtagagtgtgggtgg 39391761  T
Q  225 tttcaaattatatattctgaaaataaaaaagttgattttgtattatataatccgaatggggtaaaattgaaagttttgagggcgcacgaggggctagaag 324  Q
    ||||| |||||||||||| |||||  ||||||| |||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||| |||||| ||    
T  39391762 tttcagattatatattct-aaaattgaaaagtttattttggattatataatccgaacgggttaaaatcgaaagttttgagggcgcacgagaggctaggag 39391860  T
Q  325 gatgagaaaagaaattctcaaagcgattatgtagagtttatgg 367  Q
    |||||||||||||||||||||| | |  || ||||||||||||    
T  39391861 gatgagaaaagaaattctcaaaacaaagatatagagtttatgg 39391903  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 39410595 - 39410553
Alignment:
Q  74 aagattagttgaaatgtatatcattaggaaactaaacacatat 116  Q
    ||||| ||||||||||| |||||||||||||||||| ||||||    
T  39410595 aagatgagttgaaatgtctatcattaggaaactaaatacatat 39410553  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 5505729 - 5505808
Alignment:
Q  37 cttgaaagcgatgattggggtagcataagcctcaacaaagattagttgaaatgtatatcattaggaaactaaacacatat 116  Q
    |||||||| ||| ||||||||||||||  ||||| |||||||||||| || || ||||||||||| ||||||||||||||    
T  5505729 cttgaaagtgataattggggtagcatagacctcaccaaagattagttaaactgaatatcattagggaactaaacacatat 5505808  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 41060904 - 41060864
Alignment:
Q  75 agattagttgaaatgtatatcattaggaaactaaacacata 115  Q
    ||||||||| ||||||||||||||| | |||||||||||||    
T  41060904 agattagttcaaatgtatatcattaaggaactaaacacata 41060864  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 12088764 - 12088709
Alignment:
Q  364 atggtggtagtggtgttaatatatgaggtgagactattgttaattaggatgatattgt 421  Q
    |||||||| |||||||||||||  |||||||||||||||||||||  |||||||||||    
T  12088764 atggtggtggtggtgttaatat--gaggtgagactattgttaattttgatgatattgt 12088709  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 9488885 - 9488809
Alignment:
Q  36 tcttgaaagcgatgattggggtagcataagcctcaacaaagattagttgaaatgtatatcattaggaaactaaacac 112  Q
    ||||||||| |||| |||||||| ||||  |||   | |||||||||| ||||||||||||||| | ||||||||||    
T  9488885 tcttgaaagtgatgcttggggtaacatagaccttgcctaagattagttcaaatgtatatcattaaggaactaaacac 9488809  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 29898470 - 29898430
Alignment:
Q  74 aagattagttgaaatgtatatcattaggaaactaaacacat 114  Q
    |||||||||  ||||||||||||||||| ||||||||||||    
T  29898470 aagattagtccaaatgtatatcattagggaactaaacacat 29898430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 31721018 - 31720954
Alignment:
Q  48 tgattggggtagcataagcctcaacaaagattagttgaaatgtatatcattaggaaactaaacac 112  Q
    ||||| ||||||||||  ||||  | |||||| |||||||||||||| |||||| ||||||||||    
T  31721018 tgattcgggtagcatagacctctcccaagattggttgaaatgtatattattagggaactaaacac 31720954  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 6811491 - 6811451
Alignment:
Q  76 gattagttgaaatgtatatcattaggaaactaaacacatat 116  Q
    ||||| || ||||||||||||||| ||||||||||||||||    
T  6811491 gattaattcaaatgtatatcattaagaaactaaacacatat 6811451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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