View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_32 (Length: 413)
Name: NF0847_low_32
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 143 - 377
Target Start/End: Original strand, 47082826 - 47083060
Alignment:
| Q |
143 |
agtttttcaggtttatagacacgccaaaaagaaattattagttctattgtgtttgttttgaagctttgatgaacataatattcaagttggaattcatctt |
242 |
Q |
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| T |
47082826 |
agtttttcaggtttagagacacgccaaaaagaaattattagttctattgtgtttgttttgaagctttgatgaacataatattcaagttggaattcatctt |
47082925 |
T |
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| Q |
243 |
agtttaattagtaattttgtggaaaaataccatgctgaccaagttgtatgaaccatttttagattggtacaaagtagaatattaataatttgactactaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47082926 |
agtttaattagtaattttgtggaaaaataccatgctaaccaagttgtatgaaccatttttagattggtacaaagtagaatattaataatttgactactaa |
47083025 |
T |
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| Q |
343 |
attttagtcatgaataaattattatcatatatttt |
377 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
47083026 |
attttagtcatgaataaattattatcatatatttt |
47083060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 47082541 - 47082653
Alignment:
| Q |
33 |
gtgatgtcaaacctctgcctaccgctacaagtgttgctttgaaattttaaaagtacaagtgcattggaatgcaagaaatcttgagctaccgcaaaaccaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47082541 |
gtgatgtcaaacctctgcctaccgctacaagtgttgctttgaaattttaaaagtacaagtgcattggaatgcaagaaatcttgagctaccacaaaaccaa |
47082640 |
T |
|
| Q |
133 |
acatatgagaagt |
145 |
Q |
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||||||||||||| |
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| T |
47082641 |
acatatgagaagt |
47082653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 3510027 - 3509987
Alignment:
| Q |
373 |
attttcttgtcagctttttcaactccactcacatatttgcc |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3510027 |
attttcttgtcagctttttcaactccactcacatatttgcc |
3509987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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