View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_33 (Length: 397)

Name: NF0847_low_33
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_33
NF0847_low_33
[»] chr7 (4 HSPs)
chr7 (178-304)||(44673948-44674074)
chr7 (51-182)||(44672655-44672786)
chr7 (88-302)||(26401699-26401913)
chr7 (181-293)||(8863992-8864104)
[»] chr8 (3 HSPs)
chr8 (88-306)||(9529544-9529762)
chr8 (187-294)||(36307811-36307918)
chr8 (190-291)||(13813385-13813486)
[»] chr3 (4 HSPs)
chr3 (303-390)||(12088706-12088794)
chr3 (190-293)||(44493397-44493500)
chr3 (232-293)||(4485702-4485763)
chr3 (233-294)||(19822718-19822779)
[»] chr1 (1 HSPs)
chr1 (184-294)||(38490676-38490786)
[»] chr4 (2 HSPs)
chr4 (147-306)||(12353379-12353538)
chr4 (160-290)||(28858987-28859117)
[»] chr6 (1 HSPs)
chr6 (238-306)||(18689563-18689631)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 178 - 304
Target Start/End: Original strand, 44673948 - 44674074
Alignment:
Q  178 ttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaatt 277  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44673948 ttaggcaccggaaagtatttaggtatgccgtctatgattaggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagattaaatt 44674047  T
Q  278 cttggagcagcaagtgtttgtccaagg 304  Q
    |||||||||||||||||||||||||||    
T  44674048 cttggagcagcaagtgtttgtccaagg 44674074  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 44672655 - 44672786
Alignment:
Q  51 gtaaagaacaaatatagaatgtgtggggcgagctaacagtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtatt 150  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672655 gtaaagaacaaatatagaatgtgcggggcgagctaacagtttaccgaagttcgagattttttacagtaggaacgtttcagatgagttgaaaaacagtatt 44672754  T
Q  151 actaatatattgggggttcgtgcagtgttagg 182  Q
     ||||||||||||| |||||||||||||||||    
T  44672755 gctaatatattgggcgttcgtgcagtgttagg 44672786  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 302
Target Start/End: Original strand, 26401699 - 26401913
Alignment:
Q  88 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 187  Q
    |||||||||||||| || ||||| ||||||||||| ||  |||||| |||||||||||||||||| || || || | ||| ||||| || ||||| ||||    
T  26401699 agtttaccgaagtcagaaattttctacagtaggaatgtgccagatgcgttgaaaaacagtattacaaacattttagcggtccgtgctgttttaggtaccg 26401798  T
Q  188 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 287  Q
    | ||||||||||| ||||| ||||||||||||| | |  ||| |  ||| ||| |||||||||| || ||||| ||||||||||| || || ||||| ||    
T  26401799 gtaagtatttaggaatgccatctatgattgggatggatagaatagacacattttcttacattaaggaccgggtttggcaaagaattaactcatggagtag 26401898  T
Q  288 caagtgtttgtccaa 302  Q
    |||||||||||||||    
T  26401899 caagtgtttgtccaa 26401913  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 8864104 - 8863992
Alignment:
Q  181 ggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattctt 280  Q
    ||||| || |||||| |||||||||| || ||||| ||  ||||  | || ||||||||| |||| ||||| || || ||||||||||| ||||||||||    
T  8864104 ggcactggtaagtatctaggtatgccttccatgataggacggaataggacgaccaccttttcttatattaaggaccgtgtgtggcaaaggataaattctt 8864005  T
Q  281 ggagcagcaagtg 293  Q
    |||| ||||||||    
T  8864004 ggagtagcaagtg 8863992  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 88 - 306
Target Start/End: Original strand, 9529544 - 9529762
Alignment:
Q  88 agtttaccgaagtccgagattttttacagtaggaacgtttcagatgagttgaaaaacagtattactaatatattgggggttcgtgcagtgttaggcaccg 187  Q
    |||||||||||||  || ||||| ||||||||||| ||  ||||||  |||||||||| |||||| || || || | ||||||||| || ||||| ||||    
T  9529544 agtttaccgaagttagaaattttctacagtaggaatgtgccagatgcattgaaaaacaatattacaaacattttagcggttcgtgctgttttaggtaccg 9529643  T
Q  188 gaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcag 287  Q
    | ||||||||||  ||||| ||||||||| ||||| |  |||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||| ||    
T  9529644 gcaagtatttagaaatgccatctatgattaggagggatagaacaaccacatttgcttacattaaggatcgagtttggcaaagaattaactcatggagtag 9529743  T
Q  288 caagtgtttgtccaaggca 306  Q
    |||||||||||||||||||    
T  9529744 caagtgtttgtccaaggca 9529762  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 294
Target Start/End: Complemental strand, 36307918 - 36307811
Alignment:
Q  187 ggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagca 286  Q
    ||||||||||||||||||||||| ||||||||  | ||  ||||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| |    
T  36307918 ggaaagtatttaggtatgccgtccatgattggtcgtaatagaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagta 36307819  T
Q  287 gcaagtgt 294  Q
    | ||||||    
T  36307818 gtaagtgt 36307811  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 291
Target Start/End: Complemental strand, 13813486 - 13813385
Alignment:
Q  190 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 289  Q
    ||||||||||||||||| || ||||||||  || |  | ||  |||| |||||||| || || || || |||||||||||||||||||||||||||||||    
T  13813486 aagtatttaggtatgccttccatgattggacgggataggacggccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggagcagca 13813387  T
Q  290 ag 291  Q
    ||    
T  13813386 ag 13813385  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 12088794 - 12088706
Alignment:
Q  303 ggcataattggtgtagttatatggacgtaaatggtggtggtgttaat-atatgaggtgagactattgttaattatgatgatattgttgg 390  Q
    ||||||| |||||||||||||||||||||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||||||||    
T  12088794 ggcataactggtgtagttatatggacgtaaatggtggtggtggtgttaatatgaggtgagactattgttaattttgatgatattgttgg 12088706  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 44493397 - 44493500
Alignment:
Q  190 aagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagca 289  Q
    ||||||||||| ||||||||||||||||| ||  |  |||||||||| |||||||| |||| ||| ||||||||||||   || ||||| ||||| ||||    
T  44493397 aagtatttaggcatgccgtctatgattggcagagatagaacaaccacatttgcttatattatagaccgggtgtggcaacatattaattcgtggagtagca 44493496  T
Q  290 agtg 293  Q
    ||||    
T  44493497 agtg 44493500  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 4485763 - 4485702
Alignment:
Q  232 accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtg 293  Q
    |||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||    
T  4485763 accacctttgcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtg 4485702  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 19822779 - 19822718
Alignment:
Q  233 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgt 294  Q
    |||| ||||| ||||| |||||||| |||||||||| ||| |||||||||||||||||||||    
T  19822779 ccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgt 19822718  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 38490786 - 38490676
Alignment:
Q  184 accggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttgga 283  Q
    |||||||||||||||||||||||||| ||||| ||  |  |  |||||||||| |||||||| ||||| ||||| ||||||||||  || ||||||||||    
T  38490786 accggaaagtatttaggtatgccgtccatgatcggtcgtgatagaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttgga 38490687  T
Q  284 gcagcaagtgt 294  Q
    | || ||||||    
T  38490686 gtagtaagtgt 38490676  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 12353379 - 12353538
Alignment:
Q  147 tattactaatatattgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttac 246  Q
    ||||||| |||| ||||| || ||||| ||  | || |||||||||||| ||||  |||| || |||||||| ||| |||||||  | || ||||| |||    
T  12353379 tattactcatattttgggtgtacgtgcggtccttgggaccggaaagtatctaggcttgccttcaatgattggtagggaccgaactgcaacgtttgcatac 12353478  T
Q  247 attaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggca 306  Q
    ||||||||  |||||||||||| ||| ||||| ||||| || || |||||||| ||||||    
T  12353479 attaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggca 12353538  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 290
Target Start/End: Original strand, 28858987 - 28859117
Alignment:
Q  160 ttgggggttcgtgcagtgttaggcaccggaaagtatttaggtatgccgtctatgattgggaggaaccgaacaaccacctttgcttacattaaagatcggg 259  Q
    ||||| |||||||||||  | || || || ||||| |||||| |||| |||||||| || ||| |  |||||||||| ||||| || ||||||||||  |    
T  28858987 ttgggtgttcgtgcagttcttggaacaggtaagtacttaggtttgccatctatgatcggaagggatagaacaaccacgtttgcatatattaaagatcatg 28859086  T
Q  260 tgtggcaaagaataaattcttggagcagcaa 290  Q
    | ||||||| ||| ||||||||||| |||||    
T  28859087 tttggcaaaaaatcaattcttggagtagcaa 28859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 18689563 - 18689631
Alignment:
Q  238 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggca 306  Q
    |||||| ||||||||||  |||||||||||| ||| ||||| || || ||||| |||||||| ||||||    
T  18689563 tttgctaacattaaagacagggtgtggcaaaaaattaattcgtgaagtagcaaatgtttgtcgaaggca 18689631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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