View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_34 (Length: 391)

Name: NF0847_low_34
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_34
NF0847_low_34
[»] chr4 (15 HSPs)
chr4 (30-381)||(1519156-1519508)
chr4 (30-101)||(8184044-8184115)
chr4 (32-101)||(1548440-1548509)
chr4 (30-68)||(659756-659794)
chr4 (35-77)||(8187110-8187152)
chr4 (37-90)||(1600444-1600497)
chr4 (41-77)||(12116600-12116636)
chr4 (41-101)||(55908753-55908813)
chr4 (30-101)||(553493-553564)
chr4 (30-101)||(1513421-1513492)
chr4 (30-77)||(12121471-12121518)
chr4 (30-67)||(1489375-1489412)
chr4 (30-99)||(1524500-1524569)
chr4 (30-67)||(1537781-1537818)
chr4 (38-74)||(55505130-55505166)
[»] chr8 (7 HSPs)
chr8 (30-101)||(18315287-18315358)
chr8 (30-101)||(27922522-27922593)
chr8 (43-101)||(17628041-17628099)
chr8 (31-91)||(34936178-34936238)
chr8 (30-101)||(17636415-17636486)
chr8 (30-101)||(21235572-21235643)
chr8 (30-101)||(32151315-32151386)
[»] chr2 (3 HSPs)
chr2 (33-100)||(32785789-32785856)
chr2 (41-101)||(1037689-1037749)
chr2 (30-101)||(45245099-45245170)
[»] chr6 (8 HSPs)
chr6 (29-101)||(6402874-6402946)
chr6 (30-101)||(6415980-6416051)
chr6 (30-101)||(7994196-7994267)
chr6 (30-101)||(12102280-12102351)
chr6 (43-101)||(6585264-6585322)
chr6 (31-101)||(28935063-28935133)
chr6 (30-97)||(6432179-6432246)
chr6 (29-77)||(6394902-6394950)
[»] chr5 (2 HSPs)
chr5 (30-101)||(41901549-41901620)
chr5 (30-101)||(32267489-32267560)
[»] chr1 (2 HSPs)
chr1 (30-101)||(19468513-19468584)
chr1 (49-101)||(7554502-7554554)
[»] chr3 (2 HSPs)
chr3 (31-101)||(13470747-13470817)
chr3 (33-98)||(51113798-51113863)
[»] chr7 (1 HSPs)
chr7 (31-98)||(10614610-10614677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (41-98)||(649-706)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 30 - 381
Target Start/End: Original strand, 1519156 - 1519508
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaacacttgtaattgtgttttgaaatggtta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1519156 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaacacttgtaattgtgttttgaaatggtta 1519255  T
Q  130 caaatatattgttgtgagatatcacagagatggaagtaaagcacatggtagagaaatgcgcacagctgagagagatcaatttgagtggttgcgaaaaatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1519256 caaatatattgttgtgagatatcacagagatggaagtaaagcacatggtagagaaatgcgcacagctgagagagatcaatttgagtggttgcgaaaaatt 1519355  T
Q  230 gcacgccaatgttgctgact-aattgtatttcaggccatcaatgagaaagattattgatccaactcattattgtttcagtggcagagagtgggaactctt 328  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1519356 gcacgccaatgttgctgactcaattgtatttcaggccatcaatgagaaagattattgatccaactcattattgtttcagtggcagagagagggaactctt 1519455  T
Q  329 cttgcaccaaggatgcaatatgtttgatctgctatgctaatgtttgatctctg 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1519456 cttgcaccaaggatgtaatatgtttgatctgctatgctaatgtttgatctctg 1519508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 8184044 - 8184115
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||   |||||||||||  ||||||||    
T  8184044 agttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaa 8184115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 1548440 - 1548509
Alignment:
Q  32 ttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||  || ||||| |||||||||||||    
T  1548440 ttcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaa 1548509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 659794 - 659756
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaag 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  659794 agttcccaaactagaggtgttgaacttgtcacatacaag 659756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 8187110 - 8187152
Alignment:
Q  35 ccaaactagaggtgttgaacttgtcacatacaagggttgatga 77  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  8187110 ccaaactggaggtgttgaacttgtcacatacaagagttgatga 8187152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 1600497 - 1600444
Alignment:
Q  37 aaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctat 90  Q
    ||||| |||||||||||||||||| ||||||||||||| ||  |||||||||||    
T  1600497 aaactggaggtgttgaacttgtcatatacaagggttgacgatgaagcactctat 1600444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 12116600 - 12116636
Alignment:
Q  41 tagaggtgttgaacttgtcacatacaagggttgatga 77  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12116600 tagaggtgttgaacttgtcacatacaagtgttgatga 12116636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 55908753 - 55908813
Alignment:
Q  41 tagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| ||||||||||||||| | ||||||||  || |||||||| ||||||||||    
T  55908753 tagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaa 55908813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 553564 - 553493
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||| |||||| ||||||||||||||||||  |||||| ||||||||  |||||||  ||||||| |||||    
T  553564 agttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaa 553493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 1513421 - 1513492
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||||||||||||| |||||||||||||||  |||||  ||||||||  || ||||||| || ||||||||    
T  1513421 agttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaa 1513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 12121471 - 12121518
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 77  Q
    ||||||||||||||| ||||||||||||||| ||||||  ||||||||    
T  12121471 agttcccaaactagaagtgttgaacttgtcatatacaaatgttgatga 12121518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 1489375 - 1489412
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaa 67  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  1489375 agttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 1524500 - 1524569
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctca 99  Q
    |||||||||  | ||||||||||| ||||||| |||||| ||||||||  || |||||||| ||||||||    
T  1524500 agttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctca 1524569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 1537781 - 1537818
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaa 67  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  1537781 agttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 55505130 - 55505166
Alignment:
Q  38 aactagaggtgttgaacttgtcacatacaagggttga 74  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  55505130 aactagaggtgttgaacttgtcatatacaaaggttga 55505166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 18315287 - 18315358
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||||    
T  18315287 agttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaa 18315358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 27922593 - 27922522
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| | |||||||||||||||||| ||||||  ||||||||  ||||||| ||| ||||||||||    
T  27922593 agttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaa 27922522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 17628041 - 17628099
Alignment:
Q  43 gaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||  ||||||||||||    
T  17628041 gaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaa 17628099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 34936178 - 34936238
Alignment:
Q  31 gttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatg 91  Q
    ||||| ||||||||||||||| |||||||| ||||||| ||||||||  || |||||||||    
T  34936178 gttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatg 34936238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 17636415 - 17636486
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| | |||||||||||||||||||| ||| | ||||| ||  ||||| | ||||||||||||||    
T  17636415 agttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaa 17636486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 21235643 - 21235572
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||||| |||||||||||||||||| ||||| | |||||| |  ||| ||||||| |||| |||||    
T  21235643 agttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaa 21235572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 32151386 - 32151315
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||| |||| || |||||||| |||||||||  ||||||| |||||||  || |||||||||||||||||||    
T  32151386 agtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaa 32151315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 32785789 - 32785856
Alignment:
Q  33 tcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||  |||||||  ||||||| |||||||||||||    
T  32785789 tcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 1037689 - 1037749
Alignment:
Q  41 tagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| ||||||||||||||| | ||||||||  || |||||||| ||||||||||    
T  1037689 tagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaa 1037749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 45245099 - 45245170
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||| ||||| ||||||||||| |||||| | |||| |||||||||  || ||||| |||||||||||||    
T  45245099 agttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaa 45245170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 6402946 - 6402874
Alignment:
Q  29 cagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||| ||||||| ||||||||||||||| |||| | |||||||||  || |||||||||||||||||||    
T  6402946 cagttccccaactagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaa 6402874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 6416051 - 6415980
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||||||| || |||||||||||||||||| |||||| |||| ||||  || | |||||||||||||||||    
T  6416051 agttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaa 6415980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 7994196 - 7994267
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||| || ||||||||||||||| ||||| ||||||||||| ||||  || |||| ||||||||||||||    
T  7994196 agttccgaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaa 7994267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 12102351 - 12102280
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||||| |||||||||||||||||||||||| | |||||| |  ||| ||||||| |||| |||||    
T  12102351 agttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaa 12102280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 6585264 - 6585322
Alignment:
Q  43 gaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||| |||||||||||| |||||| |||||||||  || |||||||||||||||||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaa 6585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 28935133 - 28935063
Alignment:
Q  31 gttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||| |||| |||||||||||||||||||||||||| ||||| ||  ||||||||  |||||| |||||    
T  28935133 gttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaa 28935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 6432246 - 6432179
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatct 97  Q
    ||||||||| ||  ||||||||||||||||| ||||||| ||||||||  || |||| ||||||||||    
T  6432246 agttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatct 6432179  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 6394950 - 6394902
Alignment:
Q  29 cagttcccaaactagaggtgttgaacttgtcacatacaagggttgatga 77  Q
    |||||||| | || |||||||||||||||||| ||||||| ||||||||    
T  6394950 cagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatga 6394902  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 41901549 - 41901620
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||||| |||||||||||||||||| ||||||  ||||||||  ||||||| ||| ||||||||||    
T  41901549 agttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaa 41901620  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 32267560 - 32267489
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||||| | ||||| |||||||||||||| ||||  ||||||||  ||||||| ||| ||||||||||    
T  32267560 agttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaa 32267489  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 19468513 - 19468584
Alignment:
Q  30 agttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    ||||||||| || ||||||||||| |||||| |||||| |||||||||  || |||| ||||||||||||||    
T  19468513 agttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaa 19468584  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 7554554 - 7554502
Alignment:
Q  49 ttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||| ||| ||||||| ||||||||  ||||||||||| ||||||||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaa 7554502  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 13470747 - 13470817
Alignment:
Q  31 gttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 101  Q
    |||||||| || |||||||||||||||||| |||||| |||| ||||  || |||||||| ||||||||||    
T  13470747 gttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaa 13470817  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 51113798 - 51113863
Alignment:
Q  33 tcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctc 98  Q
    ||||||||| ||||||||  |||||||| |||||| |||||||||  || ||||||||||||||||    
T  51113798 tcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctc 51113863  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 10614677 - 10614610
Alignment:
Q  31 gttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctc 98  Q
    |||||||| || |||||||||||||||||| |||| | |||| ||||  || ||||||||||||||||    
T  10614677 gttcccaatctggaggtgttgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctc 10614610  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 649 - 706
Alignment:
Q  41 tagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctc 98  Q
    |||||||||| ||||||||||||||||| || |||||  || |||||||| |||||||    
T  649 tagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctc 706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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