View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_4 (Length: 718)
Name: NF0847_low_4
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 11399223 - 11399038
Alignment:
| Q |
1 |
ctatattctcagtagtgaatgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaactt |
100 |
Q |
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| T |
11399223 |
ctatattctcagtagtgaatgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaactt |
11399124 |
T |
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| Q |
101 |
ccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagtttttgatggtgagaagcgttgcatcca |
186 |
Q |
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| T |
11399123 |
ccaaaacagttgctaacaaatctaactgttttaactaacttgaattaaaatacaacagttttttatcgtgagaagctttgcatcca |
11399038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 36612830 - 36612695
Alignment:
| Q |
20 |
tgaaaagtgaacattacaataatttatactaagcatatgtaactaacttgtaaaacaagcaactactcttctaaccaacttccaaaacagttgctaacaa |
119 |
Q |
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||||||||||||| || ||| |||||||| |||||| ||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||| ||||| |
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| T |
36612830 |
tgaaaagtgaacactataatcatttataccaagcatgtgtaactaact-gtaaagcaagcaaccgctct-ctaaccaacttctaaaacagttgacaacaa |
36612733 |
T |
|
| Q |
120 |
atctaactgttttaactaacttgaattaaaatacaaca |
157 |
Q |
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| T |
36612732 |
acctaactgttttaactaacttaaattaaaatacaaca |
36612695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 43695224 - 43695266
Alignment:
| Q |
115 |
aacaaatctaactgttttaactaacttgaattaaaatacaaca |
157 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43695224 |
aacaaacctaactgttttaactaacttgaattaaaatacaaca |
43695266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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