View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_41 (Length: 355)

Name: NF0847_low_41
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_41
NF0847_low_41
[»] chr3 (2 HSPs)
chr3 (65-250)||(12088452-12088639)
chr3 (270-335)||(12088208-12088273)
[»] chr5 (2 HSPs)
chr5 (256-324)||(24562825-24562893)
chr5 (256-324)||(24603859-24603927)
[»] chr6 (2 HSPs)
chr6 (256-313)||(8885819-8885876)
chr6 (256-309)||(977373-977426)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 12088639 - 12088452
Alignment:
Q  65 ttgatgattattaatgatgagaaatgaatattacggtgataataaatggtgaagttaaataaaagtcttagggtgatgaacatttgtgatgaattgttgt 164  Q
    ||||||||||||  |||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  12088639 ttgatgattattggtgatgataaattaatattacggtgataataaatggtgatgctaaataaaagtcttagggtgatgaatatttgtgatgaattgttgt 12088540  T
Q  165 tgtctatatatggtgagtcttcatgcatcat--cataattagaattcaggtgatgattcgtgatgtgttgtattgctcaggaatataa 250  Q
    ||| |||||||||||||||||||||||||||  |||||||||||||  |||||||||| |||||||||||||||||||||||| ||||    
T  12088539 tgtttatatatggtgagtcttcatgcatcataacataattagaattttggtgatgattggtgatgtgttgtattgctcaggaacataa 12088452  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 12088273 - 12088208
Alignment:
Q  270 aaaccgataccggtatgcacataggtgataggaaagagttgcattctcgcatatacgtgatgatgt 335  Q
    ||||||||||| ||||  | ||||||||||||||||||||||||||||| |||||| |||||||||    
T  12088273 aaaccgataccagtatatatataggtgataggaaagagttgcattctcgtatatacatgatgatgt 12088208  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24562893 - 24562825
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcacataggtgataggaaagagttgcattctcgcatata 324  Q
    |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||||||||  |||||||||    
T  24562893 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24562825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24603927 - 24603859
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcacataggtgataggaaagagttgcattctcgcatata 324  Q
    |||||| |||||||| ||||||||||| ||||| ||||||| ||||||||||||||||  |||||||||    
T  24603927 attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata 24603859  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 8885876 - 8885819
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcacataggtgataggaaagagttgcat 313  Q
    |||||| |||||||| |||| |||||||||||| || ||||||||||| |||||||||    
T  8885876 attttggtgagtagagaccggtaccggtatgcatatgggtgataggaaggagttgcat 8885819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 977426 - 977373
Alignment:
Q  256 attttgatgagtagaaaccgataccggtatgcacataggtgataggaaagagtt 309  Q
    |||||| |||||||| | ||||||||| ||||| ||||||| ||||||||||||    
T  977426 attttggtgagtagagatcgataccggcatgcatataggtgttaggaaagagtt 977373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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