View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_42 (Length: 355)
Name: NF0847_low_42
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 65 - 250
Target Start/End: Complemental strand, 12088639 - 12088452
Alignment:
| Q |
65 |
ttgatgattattaatgatgagaaatgaatattacggtgataataaatggtgaagttaaataaaagtcttagggtgatgaacatttgtgatgaattgttgt |
164 |
Q |
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| T |
12088639 |
ttgatgattattggtgatgataaattaatattacggtgataataaatggtgatgctaaataaaagtcttagggtgatgaatatttgtgatgaattgttgt |
12088540 |
T |
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| Q |
165 |
tgtctatatatggtgagtcttcatgcatcat--cataattagaattcaggtgatgattcgtgatgtgttgtattgctcaggaatataa |
250 |
Q |
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| T |
12088539 |
tgtttatatatggtgagtcttcatgcatcataacataattagaattttggtgatgattggtgatgtgttgtattgctcaggaacataa |
12088452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 12088273 - 12088208
Alignment:
| Q |
270 |
aaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatatacgtgatgatgt |
335 |
Q |
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| T |
12088273 |
aaaccgataccagtatatatataggtgataggaaagagttgcattctcgtatatacatgatgatgt |
12088208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24562893 - 24562825
Alignment:
| Q |
256 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata |
324 |
Q |
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| T |
24562893 |
attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata |
24562825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 24603927 - 24603859
Alignment:
| Q |
256 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcattctcgcatata |
324 |
Q |
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| T |
24603927 |
attttgttgagtagataccgataccggcatgcatataggtgttaggaaagagttgcatcttcgcatata |
24603859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 17446000 - 17445951
Alignment:
| Q |
284 |
atgcatataggtgataggaaagagttgcattctcgcatatacgtgatgat |
333 |
Q |
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| T |
17446000 |
atgcatatgggtgttaggaaagagttgcatcttcgcatatacatgatgat |
17445951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 8885876 - 8885819
Alignment:
| Q |
256 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagttgcat |
313 |
Q |
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| T |
8885876 |
attttggtgagtagagaccggtaccggtatgcatatgggtgataggaaggagttgcat |
8885819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 977426 - 977373
Alignment:
| Q |
256 |
attttgatgagtagaaaccgataccggtatgcatataggtgataggaaagagtt |
309 |
Q |
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| T |
977426 |
attttggtgagtagagatcgataccggcatgcatataggtgttaggaaagagtt |
977373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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