View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_48 (Length: 305)
Name: NF0847_low_48
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 32250444 - 32250717
Alignment:
| Q |
3 |
cgtcaaatatagttatttatagaaatgttttaaaatctgccttataaaaagtaccatgattatatgacatggtttgattgaatgcatttgtnnnnnnnnn |
102 |
Q |
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| T |
32250444 |
cgtcaaatatagttatttatataaatgttttaaaatctaccttataaaa-gtaccatgattatatgacatggtttgattgcatgcatttgtaaaaaagaa |
32250542 |
T |
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| Q |
103 |
n-ttaccccatcagagcatatgtaacttaaactcttaaaatttatgctctgaaagttcaatatttaccttccagttatttgaattcaaataagttctaga |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32250543 |
aattaccccatcagagcatatgtaacttaaactcttaaaatttatgctctgaaagttcaatatttaccttccagttatttgaattcaactaagttctaga |
32250642 |
T |
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| Q |
202 |
aaattcaggttgattgtttccattgatgtttaaatcaatttagtgtttttagtgcatgtttgaattcccttttgt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250643 |
gaattcaggttgattgtttccattgatgtttaaatcaatttagtgtttttagtgcatgtttgaattcccttttgt |
32250717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 104 - 276
Target Start/End: Original strand, 32244800 - 32244972
Alignment:
| Q |
104 |
ttaccccatcagagcatatgtaacttaaactcttaaaatttatgctctgaaagttcaatatttaccttccagttatttgaattcaaataagttctagaaa |
203 |
Q |
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|||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| | |
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| T |
32244800 |
ttacaccatcagtgcatatataacttaatctcttaaaatttatgctctgaaagttcagtatttaccttccagttgtttgaattcaagtaagctctagaga |
32244899 |
T |
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| Q |
204 |
attcaggttgattgtttccattgatgtttaaatcaatttagtgtttttagtgcatgtttgaattcccttttgt |
276 |
Q |
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| T |
32244900 |
attcaggttgattgttgtcattgatgtttaaatcaatgcagtgcatttggtgcatatttggattcccttttgt |
32244972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 32255138 - 32255186
Alignment:
| Q |
136 |
ttaaaatttatgctctgaaagttcaatatttaccttccagttatttgaa |
184 |
Q |
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||||||||||| |||||||||||||||||||||||| || |||||||| |
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| T |
32255138 |
ttaaaatttattctctgaaagttcaatatttaccttgcaagtatttgaa |
32255186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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