View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0847_low_5 (Length: 687)
Name: NF0847_low_5
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 247 - 569
Target Start/End: Original strand, 30967957 - 30968260
Alignment:
| Q |
247 |
aagtatagttctaatagtgtcccatctggctacaggagcaaaaaacttcattgtaatcaactccatacttttgagagtacccctttgctactaatctggc |
346 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30967957 |
aagtatagttctattagtgtcccatctggttacaggagcaaaa-acttcattgtaatcaactccatacttttgagagtacccctttgctactaatctggc |
30968055 |
T |
|
| Q |
347 |
tttgtgtttttcaactttaccattttcattgta--ttgtcttataaatccattttacactaatcttcctgcttccagttggtaaatcagttagttcccat |
444 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968056 |
tttgtgtttttcaactttaccattttcattgtattttgtcttataaatccattttacactaatcttcctgcttccagttg-------------------- |
30968135 |
T |
|
| Q |
445 |
gtatcatttctttctatggcttcaatttcctgatccatagcctctttccaacaattgaactttgcagcttcctcataagtagcaggatcttctctattac |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968136 |
gtatcatttctttctatggcttcaatttcctgatccatagcctctttccaacaattgaactttgcagcttcctcataagtagcaggatcttctctattac |
30968235 |
T |
|
| Q |
545 |
tgaaaaagccagagtctgaaaactg |
569 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30968236 |
tgaaaaagccagagtctgaaaactg |
30968260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 24653862 - 24653908
Alignment:
| Q |
58 |
tgtaccatgctcttggagcttgtttgaggccatacaaagctttcttt |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| | |||||||||| |
|
|
| T |
24653862 |
tgtaccatgctcttggagcttgcttgagaccatatagagctttcttt |
24653908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 608565 - 608466
Alignment:
| Q |
251 |
atagttctaatagtgtcccatctggctacaggagcaaaaaacttcattgtaatcaactccatacttttgagagtacccctttgctactaatctggctttg |
350 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||| ||| |||||||| || | || ||||||| |||||||| || || ||||||| |||||||||| |
|
|
| T |
608565 |
atagttcttatagtgtcccatcttgcaactggagc-aaacacttcattatagttaataccatactgctgagagtagcctttagctactagtctggctttg |
608467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 1752623 - 1752663
Alignment:
| Q |
57 |
ctgtaccatgctcttggagcttgtttgaggccatacaaagc |
97 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
1752623 |
ctgtaccatgctcgtggtgcttgtttaaggccatacaaagc |
1752663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 42303150 - 42303102
Alignment:
| Q |
58 |
tgtaccatgctcttggagcttgtttgaggccatacaaagctttctttaa |
106 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||||||| ||||||||||| |
|
|
| T |
42303150 |
tgtaccatgctcttggcgcttgcttcaagccatacaatgctttctttaa |
42303102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 15527892 - 15527932
Alignment:
| Q |
66 |
gctcttggagcttgtttgaggccatacaaagctttctttaa |
106 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15527892 |
gctcctggagcttgtttgagaccataaaaagctttctttaa |
15527932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 259 times since January 2019
Visitors: 6127