View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_50 (Length: 290)
Name: NF0847_low_50
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 10266209 - 10265943
Alignment:
| Q |
10 |
attattctcttcctgggataatcggccaagaaagtgaagggtttttcagttctgtcctcttagaaaaacatggtgtcagctcgtgcaggagtcctaaagg |
109 |
Q |
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| T |
10266209 |
attattctcttcctgggataatcggccaagaaagtgaagggtttttcagttctgtcctcttagaaaaacatggtgtcagctcgtgcaggagttctaaagg |
10266110 |
T |
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| Q |
110 |
agctttgtttattgcatgcagacaattcatgtgatatggtgttcatatgttttctcgaaaatcggtgtgtttggttggaaacttttacaagaaaatacca |
209 |
Q |
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| T |
10266109 |
agcgttg-------catgcagacgattcatctgatatggcgttcatatgttttctcgaaaatcggtgtgtttggttggaaacttttacaagaaaatacca |
10266017 |
T |
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| Q |
210 |
actaaagtagcgttgcattggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatgacaag |
283 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10266016 |
actaaagtggcgttgcatcggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatgacaag |
10265943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 10285234 - 10284972
Alignment:
| Q |
10 |
attattctcttcctgggataatcggccaagaaagtgaagggtttttcagttctgtcctcttagaaaaacatggtgtcagctcgtgcaggagtcctaaagg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10285234 |
attattctcttcctgggataatcggccaagaaagtgaagggtttttcagttctgtcctcttagaaaaacatggtgtcagctcgtgcaggagttctaaagg |
10285135 |
T |
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| Q |
110 |
agctttgtttattgcatgcagacaattcatgtgatatggtgttcatatgttttctcgaaaatcggtgtgtttggttggaaacttttacaagaaaatacca |
209 |
Q |
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| T |
10285134 |
agcgttg-------catgcagacgattcatctgatatggcgttcatatgttttctcgaaaatcggtgtgtttggttggaaacttttacaagaaaatacca |
10285042 |
T |
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| Q |
210 |
actaaagtagcgttgcattggagaggaataatcatgacttagtgcagcacgaataacatgagagaaatga |
279 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10285041 |
actaaagtggcgttgcatcggagaggaataatcatgacttaatgcagcacgaataacatgagagaaatga |
10284972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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