View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_52 (Length: 283)
Name: NF0847_low_52
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 32851959 - 32851691
Alignment:
| Q |
1 |
ttgaccttttttgtttctcttctatcaatataaatgcctatttttggaattttcgcacgatggtaaaaacctttggtgaaaggaacatgtctagaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32851959 |
ttgaccttttttgtttctcttctatcaatataaatgcctatttttggaattttcgcacgacggtaaaaacctttggtgaaaggaacatgtctagaaggaa |
32851860 |
T |
|
| Q |
101 |
aacaaagctggtttgaatgactgtgtgtgtattagtagaacttggaacatgatacctatgtaacatatcttgttcacatgaagtaaaagaaaattaggga |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851859 |
aataaagctggtttgaatgactgtgtgtgtattagtagaactt----catgatacctatgtaacatatcttgttcacatgaagtaaaagaaaattaggga |
32851764 |
T |
|
| Q |
201 |
acactacaatggttgataattgtcatcacttgctgatagtatcactagacctgaatattgtatactctctctg |
273 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32851763 |
acactacaatggttgataattgtcattacttgctgatagtatcactagacctgaatattgtatactctctctg |
32851691 |
T |
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