View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_56 (Length: 264)

Name: NF0847_low_56
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_56
NF0847_low_56
[»] chr1 (10 HSPs)
chr1 (30-264)||(26816398-26816633)
chr1 (31-111)||(47235514-47235594)
chr1 (31-111)||(7444951-7445031)
chr1 (31-111)||(24980816-24980896)
chr1 (31-111)||(24989574-24989654)
chr1 (31-89)||(9433830-9433888)
chr1 (31-111)||(27262737-27262818)
chr1 (31-111)||(52698469-52698549)
chr1 (31-110)||(3996544-3996623)
chr1 (33-111)||(26478073-26478151)
[»] chr8 (10 HSPs)
chr8 (31-111)||(32615872-32615952)
chr8 (31-93)||(29912175-29912237)
chr8 (31-111)||(34085356-34085435)
chr8 (31-99)||(42964821-42964889)
chr8 (31-138)||(13521670-13521781)
chr8 (31-138)||(13611205-13611316)
chr8 (31-111)||(13244707-13244787)
chr8 (31-87)||(24585862-24585918)
chr8 (32-98)||(28626646-28626712)
chr8 (44-106)||(41235827-41235889)
[»] chr7 (5 HSPs)
chr7 (35-111)||(11662999-11663075)
chr7 (33-111)||(12837897-12837975)
chr7 (33-110)||(47188457-47188534)
chr7 (35-90)||(30424883-30424938)
chr7 (31-90)||(24423470-24423529)
[»] chr5 (3 HSPs)
chr5 (32-108)||(8611756-8611832)
chr5 (31-93)||(19608812-19608874)
chr5 (31-108)||(1863140-1863217)
[»] chr6 (2 HSPs)
chr6 (31-111)||(30326710-30326790)
chr6 (31-93)||(24396785-24396847)
[»] chr2 (4 HSPs)
chr2 (31-111)||(11074497-11074577)
chr2 (31-111)||(40141943-40142023)
chr2 (31-93)||(37426534-37426596)
chr2 (39-111)||(38788767-38788840)
[»] chr4 (6 HSPs)
chr4 (31-111)||(21240162-21240242)
chr4 (31-93)||(37626977-37627039)
chr4 (31-93)||(51834767-51834829)
chr4 (35-89)||(54639699-54639753)
chr4 (38-111)||(48051717-48051790)
chr4 (31-111)||(24157759-24157838)
[»] chr3 (3 HSPs)
chr3 (31-111)||(31732068-31732149)
chr3 (31-110)||(15496132-15496211)
chr3 (33-93)||(24487773-24487833)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 26816633 - 26816398
Alignment:
Q  30 gattcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaagggaatgacacttgttagc 129  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||     
T  26816633 gattcaacacattgaaacatcacaaagcaatttaaactacatgaaagttatcaattgtttctatgtttgaattcttaacaagggcatgacacttgttagt 26816534  T
Q  130 aagatcctacttttttaaatgtaaataacattgtttaattttaaggaacctaaagtgccaaccgccacccaggtgagctcttgtaag-nnnnnnnnnntg 228  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||           ||    
T  26816533 aagatcctatttttttaaatgtaaataacattgtttaattttaaggaacccaacgtgccaaccgtcacccaggtgagctcttgtaagaagaaaaaaaatg 26816434  T
Q  229 aaattgttgtttaattgttctatatatttaaaaact 264  Q
    ||||||||||||||||||||||||||||||||||||    
T  26816433 aaattgttgtttaattgttctatatatttaaaaact 26816398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 47235514 - 47235594
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||    
T  47235514 attcaacaaattgaaacattaaaaagcaactttatttacatgaaagttatcaattgtttctatttttgaattcttaacaag 47235594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 7444951 - 7445031
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||||||| |||| |||||||||||   ||||||||||||||||||| ||||||| || ||||  ||||||||    
T  7444951 attcaacacattgaaatatcaaaaagcaactttttatacatgaaagttatcaattatttctattttagaatctttaacaag 7445031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 24980896 - 24980816
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||||||||| || |||||||||| | |||||| ||| ||||||||||||| ||| |||| || |||||||||    
T  24980896 attcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24980816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 24989654 - 24989574
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||||||||| || |||||||||| | |||||| ||| ||||||||||||| ||| |||| || |||||||||    
T  24989654 attcaacacattgaaacaacaaaaagcaacttaatctacataaaaattatcaattgtttatatttttggatccttaacaag 24989574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 9433830 - 9433888
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgttt 89  Q
    ||||||||||||||||||||| | |||||||||  ||| ||| ||||||||||||||||    
T  9433830 attcaacacattgaaacatcaaagagcaactttttctatatgcaagttatcaattgttt 9433888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 27262818 - 27262737
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 111  Q
    |||||||||||| |||||| | |||| || |||  |||||| |||||||||||||||||||| | ||||||| |||||||||    
T  27262818 attcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttctattttttgaatccttaacaag 27262737  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 52698469 - 52698549
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||||||| | || ||| |||||||  || ||| |||||||||||||||||| || ||| ||| |||||||||    
T  52698469 attcaacacattgaaataacaaaaaacaactttttctccataaaagttatcaattgtttccattttttaatccttaacaag 52698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 3996623 - 3996544
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 110  Q
    |||||||| ||||||| |||| ||| ||| |||   ||||||||||||||||||| |||  |||||||||| ||||||||    
T  3996623 attcaacatattgaaatatcaaaaaacaatttttcttacatgaaagttatcaattattttcatatttgaattcttaacaa 3996544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 26478073 - 26478151
Alignment:
Q  33 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||| |||||||| |||  ||||||  |||||| ||| |||||||||||| |||| ||| ||| |||||||||    
T  26478073 tcaacacattaaaacatcaaaaaataactttttctacataaaaattatcaattgttcctattttttaattcttaacaag 26478151  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 32615872 - 32615952
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||||||||||| | ||| ||||||||  ||||||||||||||||||||||||||| |||| ||  ||||||||    
T  32615872 attcaacacattgaaacattaaaaaacaactttatttacatgaaagttatcaattgtttctatttttggatctttaacaag 32615952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 29912175 - 29912237
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    ||||||| ||||||||||||| |||||||||||| ||||||| ||||||||| || |||||||    
T  29912175 attcaactcattgaaacatcaaaaagcaactttatctacatggaagttatcatttatttctat 29912237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 34085356 - 34085435
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||||||| ||||| |||| ||||| | || ||||||||||||||||| ||||||| |||| || |||||||||    
T  34085356 attcaacacattgaatcatcaaaaagtaactt-atctccatgaaagttatcaattatttctatttttggatccttaacaag 34085435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 42964821 - 42964889
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttga 99  Q
    ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||| |||| || |||||    
T  42964821 attcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccatttttga 42964889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 13521781 - 13521670
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaaggga----atgacacttgtt 126  Q
    |||| |||||||||||||| | |||  || ||||  ||||||||||||||||||| ||||||| |||| || ||||||||| ||    | || |||||||    
T  13521781 attctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggatacttgtt 13521682  T
Q  127 agcaagatccta 138  Q
    ||||||||||||    
T  13521681 agcaagatccta 13521670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 13611316 - 13611205
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaaggga----atgacacttgtt 126  Q
    |||| |||||||||||||| | |||  || ||||  ||||||||||||||||||| ||||||| |||| || ||||||||| ||    | || |||||||    
T  13611316 attctacacattgaaacattaaaaaataattttatttacatgaaagttatcaattatttctatttttgtatccttaacaagtgatcttaggatacttgtt 13611217  T
Q  127 agcaagatccta 138  Q
    ||||||||||||    
T  13611216 agcaagatccta 13611205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 13244707 - 13244787
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||| | ||||||| |||| ||| ||| |||  |||||| ||||||||||||||||||||| |||||||  ||||||||    
T  13244707 attcaatatattgaaatatcaaaaaacaattttgtctacataaaagttatcaattgtttctatttttgaatcattaacaag 13244787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 24585862 - 24585918
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgt 87  Q
    |||||||||||| |||||||| |||||||  |||  |||||||||||||||||||||    
T  24585862 attcaacacattaaaacatcaaaaagcaatcttatatacatgaaagttatcaattgt 24585918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 28626712 - 28626646
Alignment:
Q  32 ttcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttg 98  Q
    ||||| |||||||||||||| ||| ||||||||  ||||||||| ||| ||||| ||||||| ||||    
T  28626712 ttcaatacattgaaacatcaaaaaacaactttatttacatgaaacttaacaattatttctatttttg 28626646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 41235889 - 41235827
Alignment:
Q  44 aaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatactta 106  Q
    |||||||| ||| |||||||  |||||||||| |||||||||||||| || ||||||| ||||    
T  41235889 aaacatcaaaaaacaactttttctacatgaaatttatcaattgtttccatttttgaatcctta 41235827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 11663075 - 11662999
Alignment:
Q  35 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||||||||  |||||||| ||  |||||||||||||||||||||||||||| ||||||| | |||||||    
T  11663075 aacacattgaaacatcgaaaagcaacgttttctacatgaaagttatcaattgtttctatttttgaattcctaacaag 11662999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 12837975 - 12837897
Alignment:
Q  33 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||| |||||||||||| | |||||||||| | |||||| ||| |||||||||||||||||  |||||| |||||||||    
T  12837975 tcaagacattgaaacattaaaaagcaacttaatctacataaaatttatcaattgtttctattcttgaatccttaacaag 12837897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 47188457 - 47188534
Alignment:
Q  33 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 110  Q
    |||||||||| ||| |||| |||| ||||||  |||||| |||||||| |||||||||||| ||||||| ||||||||    
T  47188457 tcaacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttctatttttgaatccttaacaa 47188534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 30424883 - 30424938
Alignment:
Q  35 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttc 90  Q
    ||||||||||||||||| |||| ||||||  |||||||||||||| ||||||||||    
T  30424883 aacacattgaaacatcaaaaagaaactttttctacatgaaagttagcaattgtttc 30424938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 24423470 - 24423529
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttc 90  Q
    |||||||||||||||||| || ||| |||||||  |||||||||||| ||| ||||||||    
T  24423470 attcaacacattgaaacaccaaaaaacaactttttctacatgaaagtcatcgattgtttc 24423529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 8611832 - 8611756
Alignment:
Q  32 ttcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaac 108  Q
    |||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| |  ||||||| ||||||    
T  8611832 ttcaacacattgaaacatcaaaaagcaactttttctacatgaaaattatcaattgtttccaattttgaatccttaac 8611756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 19608812 - 19608874
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    ||||||||||||||||||| | |||| ||||||  |||||| ||| ||||||||| |||||||    
T  19608812 attcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattatttctat 19608874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 1863140 - 1863217
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaac 108  Q
    ||||||||||||||||  | | |||| ||||||| |||||| ||| || | |||| ||||||||||||||| ||||||    
T  1863140 attcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatttctatatttgaatccttaac 1863217  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 30326710 - 30326790
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||||||||||||| | | |||||||  ||||||||||||||||||||||| | || ||| ||| |||||||||    
T  30326710 attcaacacattgaaacatcaaagaacaactttttctacatgaaagttatcaattgttcccatttttaaatccttaacaag 30326790  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 24396847 - 24396785
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    |||||| |||||||||||| | ||| ||||||||  || ||||||||||||||||||||||||    
T  24396847 attcaaaacattgaaacattaaaaaacaactttatttatatgaaagttatcaattgtttctat 24396785  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 11074577 - 11074497
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||||||||||| | |||||||||||  || |||| |||||||| |||||||| || ||||||| |||||||||    
T  11074577 attcaacacattgaaacataaaaaagcaactttttctgcatggaagttatctattgtttccatttttgaatccttaacaag 11074497  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 40142023 - 40141943
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||| |||||||||| || |||||||||||| ||||||||||||||| | |||||||||| |||  || |||||||||    
T  40142023 attcaactcattgaaacaccaaaaagcaactttatctacatgaaagttataatttgtttctatttttttatccttaacaag 40141943  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 37426596 - 37426534
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    |||||||||||||||| |||| ||||||| |||  |||||||||||||||  |||||||||||    
T  37426596 attcaacacattgaaatatcaaaaagcaattttttctacatgaaagttatggattgtttctat 37426534  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 38788767 - 38788840
Alignment:
Q  39 cattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 111  Q
    |||| |||||||| |||| ||||||  ||||||||||||| ||||||||||||| | ||||||| |||||||||    
T  38788767 cattaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaag 38788840  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 21240162 - 21240242
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||||||| || | ||| |||||||  |||| |||||||||||||||||||| || ||| ||| |||||||||    
T  21240162 attcaacacattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttccatttttaaatccttaacaag 21240242  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 37626977 - 37627039
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    |||||||||||| |||||| | |||| ||||||  |||||| |||||||||||||||||||||    
T  37626977 attcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttctat 37627039  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 51834829 - 51834767
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    ||||||| | |||||||| || |||||||||||| ||||||||||||||||| || |||||||    
T  51834829 attcaactcgttgaaacaccaaaaagcaactttatctacatgaaagttatcatttatttctat 51834767  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 54639753 - 54639699
Alignment:
Q  35 aacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgttt 89  Q
    |||| |||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  54639753 aacaaattgaaacatcaaaaagcaactttttctacatgaaagctatcaattgttt 54639699  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 48051717 - 48051790
Alignment:
Q  38 acattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    ||||||||||| || |||| ||||||  |||||| ||| ||||||||| ||||||| ||||||| |||||||||    
T  48051717 acattgaaacaacaaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaacaag 48051790  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 24157838 - 24157759
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaag 111  Q
    |||||||||||| |||||||| ||||||||||| | |  |||||||||||||||| ||| ||| |||| || |||||||||    
T  24157838 attcaacacattaaaacatcaaaaagcaacttt-attctatgaaagttatcaattatttttatttttggattcttaacaag 24157759  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 31732149 - 31732068
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttcta-tatttgaatacttaacaag 111  Q
    |||||||| |||||||||||| |||||||||||  | ||||||||||||| |||| |||| | | ||||||| |||||||||    
T  31732149 attcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaag 31732068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 15496211 - 15496132
Alignment:
Q  31 attcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctatatttgaatacttaacaa 110  Q
    |||||||| ||||||  |||| ||||||||||| |  |||||||||||||||||| ||| ||| || |||| ||||||||    
T  15496211 attcaacatattgaattatcaaaaagcaacttttaacacatgaaagttatcaattatttatattttggaatccttaacaa 15496132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 24487773 - 24487833
Alignment:
Q  33 tcaacacattgaaacatcacaaagcaactttaactacatgaaagttatcaattgtttctat 93  Q
    |||||| ||| |||||||| |||  ||||||  |||||| |||||||||||||||||||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctat 24487833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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