View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_6 (Length: 606)
Name: NF0847_low_6
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 508
Target Start/End: Original strand, 30966807 - 30967301
Alignment:
| Q |
30 |
gagtttgatacaagactgctttatatagcaacctgagatacacaata---------------agctaagcaaccaaaagaaactaactaatgctcaagaa |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
30966807 |
gagtttgatacaagactgctttatatagtaacctgagatacacaatagccgagttacttgacagctaagcaaccaaaagaaactaactaatactcaagaa |
30966906 |
T |
|
| Q |
115 |
acacttccctaaactgaacttcatgatacacaaaatcagtttacaaacatacaaacatactgaatagaaaaacaaagaactnnnnnnnnncagcttagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
30966907 |
acacttccctaaactgaacttcatgatacacaaaatcagtttacaaacatacaaacatactgaatagaaagacaaagaactaaaaaaaaacagcttagct |
30967006 |
T |
|
| Q |
215 |
agaaacttcacagatgcctagcaaaa-tgtctccaacttcaaaagcttggtcataatatctgctatatgttcttgagtgctgcagtgtgacatctcaact |
313 |
Q |
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|
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30967007 |
agaaacttcacagatgcctagcaaaaatgtctcaaacttcaaaggcttggtcataatatctgctatatgttcttgagtgctgcagtgtgacatctcaact |
30967106 |
T |
|
| Q |
314 |
attccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctgaac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30967107 |
attccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagatgaac |
30967206 |
T |
|
| Q |
414 |
tattatcacactgaatgacagtgcaatttgttccaggatccttctgagccaaactgcttgacaagcacaagaagctgcagctacaaactctgctt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30967207 |
tattatcacactgaatgacagtgcaatttgttccaggatccttctgagctaaactgcttgacaagcacaagaagctgcagctacaaactctgctt |
30967301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 507 - 595
Target Start/End: Original strand, 30967840 - 30967928
Alignment:
| Q |
507 |
tttccatagaatgtttgaactcttcaaacactacttcatcatttcaagtgtagattaagtcatctacatacaaacttacaataagtatt |
595 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30967840 |
tttccatagaatgtttgaactcttcaaacacttcttcatcatttcaagtgtagattaagtcatctacatacaaacttacggtaagtatt |
30967928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 423
Target Start/End: Original strand, 9938644 - 9938751
Alignment:
| Q |
316 |
tccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatagctgaacta |
415 |
Q |
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||||| || ||||||||| ||||||||||||||||| |||||||||||||| || ||||||||| || || ||||| | |||||| |||| |||||| |
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| T |
9938644 |
tccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaacta |
9938743 |
T |
|
| Q |
416 |
ttatcaca |
423 |
Q |
| |
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|||||||| |
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|
| T |
9938744 |
ttatcaca |
9938751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 423
Target Start/End: Complemental strand, 42971949 - 42971834
Alignment:
| Q |
308 |
tcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaatag |
407 |
Q |
| |
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||||| ||||| | ||| ||||| ||||| ||||| |||||||||||||| || ||||| || ||||||||| | ||||||||| | ||| ||||| | |
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|
| T |
42971949 |
tcaacaattccatctttagtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatgg |
42971850 |
T |
|
| Q |
408 |
ctgaactattatcaca |
423 |
Q |
| |
|
|||||||||||||| |
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| T |
42971849 |
aagaactattatcaca |
42971834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 30288331 - 30288291
Alignment:
| Q |
32 |
gtttgatacaagactgctttatatagcaacctgagatacac |
72 |
Q |
| |
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||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
30288331 |
gtttggtacaagactgctatatatagcaaactgagatacac |
30288291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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