View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_64 (Length: 225)
Name: NF0847_low_64
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_64 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 38875005 - 38874794
Alignment:
| Q |
14 |
agaacctgtgaacgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcgagagcttcacgccccccagcttcatcatgaccataaccag |
113 |
Q |
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| T |
38875005 |
agaacctgtgaacgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcaagagcttcacgccccccagtttcatcatgaccataaccag |
38874906 |
T |
|
| Q |
114 |
tgcaaccaccaaagtgctgacagcattaacaaaataaccaattagggcatgtttagattgacttatttgaacttatttactcgaataaagaccaatgaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||| |
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| T |
38874905 |
tgcaaccaccaaagtgctgacagcattaacaaaataaccaattagggcatgtttagattgacttatttgagcttatttactagcataaagaccaatgaga |
38874806 |
T |
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| Q |
214 |
ctaagcctgttt |
225 |
Q |
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|||||||||||| |
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| T |
38874805 |
ctaagcctgttt |
38874794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 14926893 - 14926932
Alignment:
| Q |
155 |
ttagggcatgtttagattgacttatttgaacttatttact |
194 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |
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| T |
14926893 |
ttagggcttgtttggattgacttatttgaacttatttact |
14926932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 43046821 - 43046789
Alignment:
| Q |
157 |
agggcatgtttagattgacttatttgaacttat |
189 |
Q |
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| T |
43046821 |
agggcatgtttagattgacttatttgaacttat |
43046789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 44988363 - 44988394
Alignment:
| Q |
162 |
atgtttagattgacttatttgaacttatttac |
193 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
44988363 |
atgtttagattgacttatttgaacttatttac |
44988394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 29249550 - 29249513
Alignment:
| Q |
157 |
agggcatgtttagattgacttatttgaacttatttact |
194 |
Q |
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||||||||||| ||||||||||||||| |||||||||| |
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| T |
29249550 |
agggcatgtttggattgacttatttgagcttatttact |
29249513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 2416473 - 2416444
Alignment:
| Q |
154 |
attagggcatgtttagattgacttatttga |
183 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
2416473 |
attagggcatgtttagattgacttatttga |
2416444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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