View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_67 (Length: 223)
Name: NF0847_low_67
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 46999908 - 46999819
Alignment:
| Q |
1 |
tttagagaaggaaaagttctccaaaaatggatcatatatgtaacaccatcaccaaatacacactgtgtttctaattctacaccccctcat |
90 |
Q |
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| T |
46999908 |
tttagagaaggaaaagttctccaaaaatggatcatatatgtaaaaccatcaccaaatacacactgtgtttctaattctacaccccctcat |
46999819 |
T |
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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7935184 - 7935111
Alignment:
| Q |
1 |
tttagagaaggaaaagttctccaaaaatggatcatatatgtaacaccatcaccaaatacacactgtgtttctaa |
74 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
7935184 |
tttagagaaggtaaagtgctccaaaaatggatcatatatgtaacaccatcaccaaatacactatgtatttctaa |
7935111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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