View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_71 (Length: 215)
Name: NF0847_low_71
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 1978316 - 1978496
Alignment:
| Q |
1 |
attttctaccagcatagtcaactaaatgtgacatgcttgacaaaacttccctctttggttcaccttcttgcattgcataaatttgaagtaactcgagtaa |
100 |
Q |
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| T |
1978316 |
attttctaccagcatagtcaactaaatgtgacatgcttgacaaaacttccctctttggttcaccttcttgcattgcataaatttgaagtaactcgagtaa |
1978415 |
T |
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| Q |
101 |
gaatgatgcatcaacaatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatgctctaactct |
181 |
Q |
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| T |
1978416 |
gaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatgctctaactct |
1978496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1948090 - 1947913
Alignment:
| Q |
1 |
attttctaccagcatagtcaactaaatgtgacatgcttgacaaaacttccctctttggttcaccttcttgcattgcataaatttgaagtaactcgagtaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| |||| |||| | |||||||||||||||||||||||||||||||||| ||||| |
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| T |
1948090 |
attttctaccagcatagtcaactaaatgtgacatgctagatgaaactaccctttttgttgcaccttcttgcattgcataaatttgaagtaactcaagtaa |
1947991 |
T |
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| Q |
101 |
gaatgatgcatcaacaatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatgctctaac |
178 |
Q |
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| T |
1947990 |
gaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatcctctaac |
1947913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 1985294 - 1985407
Alignment:
| Q |
64 |
cttcttgcattgcataaatttgaagtaactcgagtaagaatgatgcatcaacaatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtg |
163 |
Q |
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| T |
1985294 |
cttcttgcatggcataaaattgaaggaactcaagtaggaatgatgcatcaacaatcatcatccacgccaaggtttcgccattcaaatccaagaatttgtg |
1985393 |
T |
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| Q |
164 |
gtaacatgctctaa |
177 |
Q |
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||| |||||||||| |
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| T |
1985394 |
gtagcatgctctaa |
1985407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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