View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0847_low_73 (Length: 213)

Name: NF0847_low_73
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0847_low_73
NF0847_low_73
[»] chr3 (23 HSPs)
chr3 (1-123)||(1281084-1281206)
chr3 (123-164)||(44785401-44785442)
chr3 (123-164)||(6013341-6013382)
chr3 (123-164)||(9111499-9111540)
chr3 (123-164)||(10298063-10298104)
chr3 (123-164)||(17653796-17653837)
chr3 (123-164)||(19557057-19557098)
chr3 (123-164)||(34080035-34080076)
chr3 (123-164)||(37509005-37509046)
chr3 (123-164)||(40691001-40691042)
chr3 (123-164)||(42507360-42507401)
chr3 (123-164)||(48340481-48340522)
chr3 (123-164)||(49823386-49823427)
chr3 (125-164)||(8817393-8817432)
chr3 (125-164)||(22722015-22722054)
chr3 (123-162)||(51406759-51406798)
chr3 (134-164)||(42170362-42170392)
chr3 (123-164)||(2787837-2787878)
chr3 (123-164)||(4238678-4238719)
chr3 (123-164)||(8437509-8437550)
chr3 (123-164)||(21295331-21295372)
chr3 (123-164)||(38964476-38964517)
chr3 (123-164)||(46208114-46208155)
[»] chr8 (21 HSPs)
chr8 (1-123)||(1674196-1674318)
chr8 (1-93)||(20863883-20863975)
chr8 (28-93)||(16686334-16686399)
chr8 (123-164)||(54617-54658)
chr8 (123-164)||(2890167-2890208)
chr8 (123-164)||(6552739-6552780)
chr8 (123-164)||(7785783-7785824)
chr8 (123-164)||(15888357-15888398)
chr8 (123-164)||(25601005-25601046)
chr8 (123-164)||(33289266-33289307)
chr8 (123-164)||(39571208-39571249)
chr8 (123-162)||(32211368-32211407)
chr8 (134-164)||(13578941-13578971)
chr8 (123-164)||(3304283-3304324)
chr8 (123-164)||(7012255-7012296)
chr8 (123-164)||(7805704-7805745)
chr8 (123-164)||(12763659-12763700)
chr8 (123-164)||(31654697-31654738)
chr8 (123-164)||(43199359-43199400)
chr8 (123-164)||(44498192-44498233)
chr8 (124-164)||(12343146-12343186)
[»] chr5 (14 HSPs)
chr5 (16-123)||(28000154-28000261)
chr5 (19-90)||(24103002-24103073)
chr5 (123-164)||(6126908-6126949)
chr5 (123-164)||(9395434-9395475)
chr5 (123-164)||(13103108-13103149)
chr5 (123-164)||(17025708-17025749)
chr5 (123-164)||(23360026-23360067)
chr5 (123-164)||(36563543-36563584)
chr5 (123-164)||(41989412-41989453)
chr5 (134-164)||(11795252-11795282)
chr5 (134-164)||(13033135-13033165)
chr5 (123-164)||(21576030-21576071)
chr5 (123-164)||(37148960-37149001)
chr5 (123-164)||(37642038-37642079)
[»] chr6 (43 HSPs)
chr6 (1-95)||(4617020-4617114)
chr6 (1-98)||(4480688-4480785)
chr6 (17-99)||(4601783-4601865)
chr6 (2-93)||(4570972-4571063)
chr6 (28-98)||(4505852-4505922)
chr6 (1-98)||(4504437-4504534)
chr6 (1-98)||(4516316-4516413)
chr6 (12-93)||(4557125-4557206)
chr6 (12-93)||(4560506-4560587)
chr6 (34-98)||(4492950-4493014)
chr6 (16-97)||(4299795-4299876)
chr6 (34-98)||(3171736-3171800)
chr6 (1-93)||(4585636-4585728)
chr6 (1-93)||(4592231-4592323)
chr6 (15-93)||(4563711-4563789)
chr6 (28-93)||(4606958-4607023)
chr6 (1-93)||(4579432-4579524)
chr6 (1-93)||(4613758-4613850)
chr6 (19-90)||(4267224-4267295)
chr6 (2-93)||(4574308-4574399)
chr6 (42-96)||(4515202-4515256)
chr6 (12-89)||(4598175-4598252)
chr6 (1-98)||(4625946-4626043)
chr6 (42-98)||(4461118-4461174)
chr6 (29-95)||(4392094-4392160)
chr6 (3-87)||(4490400-4490481)
chr6 (123-164)||(2830419-2830460)
chr6 (123-164)||(6330199-6330240)
chr6 (123-164)||(8099614-8099655)
chr6 (123-164)||(8382974-8383015)
chr6 (123-164)||(9644780-9644821)
chr6 (123-164)||(9650797-9650838)
chr6 (123-164)||(11572150-11572191)
chr6 (123-164)||(13853598-13853639)
chr6 (123-164)||(26602407-26602448)
chr6 (23-74)||(4568072-4568123)
chr6 (125-164)||(6143638-6143677)
chr6 (123-162)||(35031006-35031045)
chr6 (134-164)||(8417809-8417839)
chr6 (134-164)||(28747150-28747180)
chr6 (123-164)||(6068650-6068691)
chr6 (34-90)||(4622145-4622201)
chr6 (134-162)||(17992074-17992102)
[»] scaffold0288 (1 HSPs)
scaffold0288 (16-90)||(3774-3848)
[»] scaffold0477 (1 HSPs)
scaffold0477 (1-90)||(4726-4815)
[»] chr7 (17 HSPs)
chr7 (34-87)||(3086426-3086479)
chr7 (123-164)||(31319404-31319445)
chr7 (127-164)||(1565738-1565775)
chr7 (123-164)||(1738452-1738493)
chr7 (123-164)||(7240833-7240874)
chr7 (123-164)||(7482309-7482350)
chr7 (123-164)||(9268840-9268881)
chr7 (123-164)||(22285783-22285824)
chr7 (123-164)||(23314144-23314185)
chr7 (123-164)||(38441544-38441585)
chr7 (123-164)||(46840944-46840985)
chr7 (124-164)||(33418460-33418500)
chr7 (134-164)||(94334-94364)
chr7 (134-164)||(36016212-36016242)
chr7 (134-164)||(36583479-36583509)
chr7 (134-164)||(38063929-38063959)
chr7 (123-164)||(4790332-4790373)
[»] chr4 (20 HSPs)
chr4 (123-164)||(7579394-7579435)
chr4 (123-164)||(3422144-3422185)
chr4 (123-164)||(6121898-6121939)
chr4 (123-164)||(46797809-46797850)
chr4 (123-164)||(47833695-47833736)
chr4 (123-164)||(51894587-51894628)
chr4 (124-164)||(5986960-5987000)
chr4 (123-162)||(3904688-3904727)
chr4 (123-162)||(20538691-20538730)
chr4 (123-166)||(46797730-46797773)
chr4 (134-164)||(3993060-3993090)
chr4 (134-164)||(24704454-24704484)
chr4 (123-164)||(3372205-3372246)
chr4 (123-164)||(33621880-33621921)
chr4 (123-164)||(41469771-41469812)
chr4 (123-164)||(42797816-42797857)
chr4 (123-164)||(43900633-43900674)
chr4 (123-164)||(47838622-47838663)
chr4 (123-164)||(48336347-48336388)
chr4 (123-164)||(53337454-53337495)
[»] chr1 (17 HSPs)
chr1 (123-164)||(34042780-34042821)
chr1 (123-164)||(9981731-9981772)
chr1 (123-164)||(11796017-11796058)
chr1 (123-164)||(12483633-12483674)
chr1 (123-164)||(14984921-14984962)
chr1 (123-164)||(25694403-25694444)
chr1 (123-164)||(27159363-27159404)
chr1 (123-164)||(31842800-31842841)
chr1 (123-164)||(39401971-39402012)
chr1 (123-164)||(44668098-44668139)
chr1 (123-164)||(47216704-47216745)
chr1 (123-164)||(47777486-47777527)
chr1 (134-164)||(47588353-47588383)
chr1 (123-164)||(1050972-1051013)
chr1 (123-164)||(11897138-11897179)
chr1 (123-164)||(26471070-26471111)
chr1 (124-164)||(44955212-44955252)
[»] scaffold0009 (1 HSPs)
scaffold0009 (123-164)||(49589-49630)
[»] chr2 (18 HSPs)
chr2 (123-164)||(3055642-3055683)
chr2 (123-164)||(6648524-6648565)
chr2 (123-164)||(9047760-9047801)
chr2 (123-164)||(12337942-12337983)
chr2 (123-164)||(13197715-13197756)
chr2 (123-164)||(15372310-15372351)
chr2 (123-164)||(15896926-15896967)
chr2 (123-164)||(37990018-37990059)
chr2 (123-164)||(38917527-38917568)
chr2 (123-164)||(41478644-41478685)
chr2 (123-164)||(44398770-44398811)
chr2 (125-164)||(16243790-16243829)
chr2 (134-164)||(44397631-44397661)
chr2 (123-164)||(13344568-13344609)
chr2 (123-164)||(16044322-16044363)
chr2 (123-164)||(30099187-30099228)
chr2 (123-164)||(37666615-37666656)
chr2 (123-164)||(41492901-41492942)
[»] scaffold1707 (1 HSPs)
scaffold1707 (134-164)||(1419-1449)
[»] scaffold0482 (1 HSPs)
scaffold0482 (123-164)||(12944-12985)
[»] scaffold0464 (1 HSPs)
scaffold0464 (123-164)||(6136-6177)
[»] scaffold0204 (1 HSPs)
scaffold0204 (123-164)||(23869-23910)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1281206 - 1281084
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagatag 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1281206 ttgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaattagatag 1281107  T
Q  101 aatgatattgttctctgcaatgc 123  Q
    |||||||||||| ||||||||||    
T  1281106 aatgatattgttttctgcaatgc 1281084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 44785401 - 44785442
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  44785401 cctccggttctatttataagagaattttgggtcaacaaaagt 44785442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6013341 - 6013382
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6013341 cctccggtcctatttataagagaattttgggtcaacaaaagt 6013382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 9111499 - 9111540
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9111499 cctccggtcctatttataagagaattttgggtcaacaaaagt 9111540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 10298104 - 10298063
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  10298104 cctccggtcctatttataagagaattttgggtcaacaaaagt 10298063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 17653837 - 17653796
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  17653837 cctccggtcctatttataagagaattttgggtcaacaaaagt 17653796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 19557057 - 19557098
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  19557057 cctccggtcctatttataagagaattttgggtcaacaaaagt 19557098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 34080035 - 34080076
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  34080035 cctccggtcctatttataagagaattttgggtcaacaaaagt 34080076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 37509046 - 37509005
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  37509046 cctccggtcctatttataagagaattttgggtcaacaaaagt 37509005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 40691001 - 40691042
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  40691001 cctccggtcctatttataagagaattttgggtcaacaaaagt 40691042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 42507360 - 42507401
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  42507360 cctccggtcctatttataagagaattttgggtcaacaaaagt 42507401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 48340522 - 48340481
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  48340522 cctccggtcctatttataagagaattttgggtcaacaaaagt 48340481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 49823386 - 49823427
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  49823386 cctccggtcctatttataagagaattttgggtcaacaaaagt 49823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 8817393 - 8817432
Alignment:
Q  125 tccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  8817393 tccggtcctatttataagagaattttgggtcaacaaaagt 8817432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 22722054 - 22722015
Alignment:
Q  125 tccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  22722054 tccggtcctatttataagagaattttgggtcaacaaaagt 22722015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 51406798 - 51406759
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaa 162  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  51406798 cctccggtcctatttataagagaattttgggtcaacaaaa 51406759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 42170362 - 42170392
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  42170362 atttataagagaattttgggtcaacaaaagt 42170392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 2787837 - 2787878
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||| |||||||    
T  2787837 cctccggtcctatttataagagaattttgggtcagcaaaagt 2787878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 4238719 - 4238678
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  4238719 cctccggtcctatttataagagaatttttggtcaacaaaagt 4238678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 8437550 - 8437509
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||| ||||||||||||    
T  8437550 cctccggtcctatttataagagaattttgagtcaacaaaagt 8437509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 21295331 - 21295372
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  21295331 cctccggtcctatttataagagaattttaggtcaacaaaagt 21295372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 38964517 - 38964476
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  38964517 cctccggtcctatttataagagaatttttggtcaacaaaagt 38964476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 46208155 - 46208114
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  46208155 cctccggtcctatttataagagaattttaggtcaacaaaagt 46208114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1674318 - 1674196
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagatag 100  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1674318 ttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaattagatag 1674219  T
Q  101 aatgatattgttctctgcaatgc 123  Q
    |||||||||||| ||||||||||    
T  1674218 aatgatattgttttctgcaatgc 1674196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 20863883 - 20863975
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||  ||| |||||| |||| ||||| |  ||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  20863883 ttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaat 20863975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 16686334 - 16686399
Alignment:
Q  28 agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    ||||| ||||||||||||||||||||||| || |||||||||| ||| || |||||||||||||||    
T  16686334 agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat 16686399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 54617 - 54658
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  54617 cctccggtcctatttataagagaattttgggtcaacaaaagt 54658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 2890167 - 2890208
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  2890167 cctccggtcctatttataagagaattttgggtcaacaaaagt 2890208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 6552780 - 6552739
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6552780 cctccggtcctatttataagagaattttgggtcaacaaaagt 6552739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 7785783 - 7785824
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  7785783 cctccggtcctatttataagagaattttgggtcaacaaaagt 7785824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 15888357 - 15888398
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  15888357 cctccagttctatttataagagaattttgggtcaacaaaagt 15888398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 25601005 - 25601046
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  25601005 cctccggtcctatttataagagaattttgggtcaacaaaagt 25601046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 33289266 - 33289307
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  33289266 cctccggtcctatttataagagaattttgggtcaacaaaagt 33289307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 39571208 - 39571249
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  39571208 cctccggtcctatttataagagaattttgggtcaacaaaagt 39571249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 32211368 - 32211407
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaa 162  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  32211368 cctccggtcctatttataagagaattttgggtcaacaaaa 32211407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 13578971 - 13578941
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  13578971 atttataagagaattttgggtcaacaaaagt 13578941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 3304283 - 3304324
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  3304283 cctccggtcctatttataagaaaattttgggtcaacaaaagt 3304324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 7012296 - 7012255
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  7012296 cctccggtcctatttataagagaattttggatcaacaaaagt 7012255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 7805704 - 7805745
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||| |||||||    
T  7805704 cctccggtcctatttataagagaattttgggtcagcaaaagt 7805745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 12763659 - 12763700
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  12763659 cctccggtcctatttataagataattttgggtcaacaaaagt 12763700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 31654738 - 31654697
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||| ||||||||||||||||||||||    
T  31654738 cctccggtcctatttataaaagaattttgggtcaacaaaagt 31654697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 43199359 - 43199400
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  43199359 cctccggtcctatttataagagaatttttggtcaacaaaagt 43199400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 44498192 - 44498233
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  44498192 cctccggtcctatttataagagaattttgggtcaataaaagt 44498233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 12343146 - 12343186
Alignment:
Q  124 ctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  12343146 ctccggtcctatttataagagaatttttggtcaacaaaagt 12343186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 28000154 - 28000261
Alignment:
Q  16 gaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagatagaatgatattgttctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||||||||||| ||    
T  28000154 gaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaattagatattatgatattgttttc 28000253  T
Q  116 tgcaatgc 123  Q
    ||||||||    
T  28000254 tgcaatgc 28000261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 24103073 - 24103002
Alignment:
Q  19 gagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa 90  Q
    |||||||| ||| | ||||||| ||||||||||||||| |||||||| |||||||| ||  |||||||||||    
T  24103073 gagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 6126949 - 6126908
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6126949 cctccggtcctatttataagagaattttgggtcaacaaaagt 6126908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9395475 - 9395434
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9395475 cctccggtcctatttataagagaattttgggtcaacaaaagt 9395434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 13103149 - 13103108
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  13103149 cctccggtcctatttataagagaattttgggtcaacaaaagt 13103108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 17025749 - 17025708
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  17025749 cctccggtcctatttataagagaattttgggtcaacaaaagt 17025708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 23360067 - 23360026
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  23360067 cctccggtcctatttataagagaattttgggtcaacaaaagt 23360026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 36563543 - 36563584
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  36563543 cctccggtcctatttataagagaattttgggtcaacaaaagt 36563584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 41989412 - 41989453
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  41989412 cctccggtcctatttataagagaattttgggtcaacaaaagt 41989453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 11795282 - 11795252
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  11795282 atttataagagaattttgggtcaacaaaagt 11795252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 13033165 - 13033135
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  13033165 atttataagagaattttgggtcaacaaaagt 13033135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 21576071 - 21576030
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  21576071 cctccggtcctatttataagagaattttggatcaacaaaagt 21576030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 37148960 - 37149001
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||| ||||||||||||||||||||||    
T  37148960 cctccggtcctatttataatagaattttgggtcaacaaaagt 37149001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 37642079 - 37642038
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  37642079 cctccggtcctatttataagagaattttgggtcaataaaagt 37642038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 4617114 - 4617020
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaatta 95  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||    
T  4617114 ttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaatta 4617020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4480785 - 4480688
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    |||||||||  ||| |||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  4480785 ttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaattagat 4480688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 4601865 - 4601783
Alignment:
Q  17 aggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagata 99  Q
    |||||| |||||||| ||||||||||||||||| |||| | |||||||| |||||||| ||||||||||||||||||||||||    
T  4601865 aggagagcactagactaggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaattagata 4601783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 4571063 - 4570972
Alignment:
Q  2 tgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    ||||||||  |||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||| || ||||||||| |||||    
T  4571063 tgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaat 4570972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 4505922 - 4505852
Alignment:
Q  28 agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    ||||| ||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  4505922 agacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaattagat 4505852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4504437 - 4504534
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    |||||||||  ||| |||||| |||| ||||  ||||||||||||||||||||||| ||||||||||||||||| || ||||||||| || |||||||    
T  4504437 ttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaaaaatattagat 4504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4516413 - 4516316
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    |||||||||  ||| |||||| |||| ||||||||||||||||||||  ||||||| || |||||||||||||| ||| |||| ||||||||||||||    
T  4516413 ttgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaattagat 4516316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 4557206 - 4557125
Alignment:
Q  12 ggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||| |||| ||||| |||||||||||||||||||| || || |||||||||||||| || |||||||||||||||    
T  4557206 ggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaat 4557125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 4560587 - 4560506
Alignment:
Q  12 ggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||| | |||| ||||| || |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  4560587 ggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaat 4560506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 4493014 - 4492950
Alignment:
Q  34 ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  4493014 ggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaattagat 4492950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 4299795 - 4299876
Alignment:
Q  16 gaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattaga 97  Q
    |||||||||||||  |||||||||||||| ||||||||||| |||||||| |||||||| ||  ||||||||||| ||||||    
T  4299795 gaggagaacactaatccaggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaatattaga 4299876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 3171800 - 3171736
Alignment:
Q  34 ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    ||||||||||||||||||||||| || |||||||||||||| || |||||||||||| |||||||    
T  3171800 ggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaatattagat 3171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4585728 - 4585636
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||  |||||||||| |||| ||||| || |||||||||||||| ||||| || |||||||||||||| || ||||||||| |||||    
T  4585728 ttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaat 4585636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4592323 - 4592231
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||  ||| ||||||||||| ||||| || ||||||||||| |||||||| |||||| |||| ||||| |||||||||||| |||||    
T  4592323 ttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaat 4592231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 4563789 - 4563711
Alignment:
Q  15 ggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||| ||||| ||| | || |||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||    
T  4563789 ggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaat 4563711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 4606958 - 4607023
Alignment:
Q  28 agaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    ||||||||||||| ||||||||||||||| || |||||||||||| | || |||||||||||||||    
T  4606958 agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaat 4607023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 4579524 - 4579432
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||  || ||||||| |||| ||||| || || ||||||||||||||||| || |||||||||||||| ||||| || |||||||||    
T  4579524 ttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaat 4579432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4613758 - 4613850
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    |||||||||  ||| |||||| |||| |||||||| ||||||||||| |||||||| ||||||||||| || || ||| |||| |||||||||    
T  4613758 ttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaat 4613850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4267224 - 4267295
Alignment:
Q  19 gagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa 90  Q
    |||||||| ||||| ||||||| ||||||||||||||| |||||||| |||||||| ||  |||||||||||    
T  4267224 gagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 4574399 - 4574308
Alignment:
Q  2 tgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaat 93  Q
    ||||||||  || ||||| | |||| ||||| || |||||||||||||  ||||| || |||||||||||||| ||||||||||||||||||    
T  4574399 tgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaat 4574308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 4515202 - 4515256
Alignment:
Q  42 ttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattag 96  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  4515202 ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaattag 4515256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 4598252 - 4598175
Alignment:
Q  12 ggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaaca 89  Q
    |||||||||| | || ||||  || |||||||||||||||||||| || |||||||||||||| ||||| ||||||||    
T  4598252 ggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaaca 4598175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4626043 - 4625946
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    |||||||||  ||| |||||||||| ||| || ||||||||||||||||||||  | || ||| ||||||| || || |||||||||||| |||||||    
T  4626043 ttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggataaactgattaatgatgtcttgcttaaacaatattagat 4625946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 4461174 - 4461118
Alignment:
Q  42 ttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaattagat 98  Q
    |||||||| |||||| |||||||| |||||||| || ||||||||||||||||||||    
T  4461174 ttcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaattagat 4461118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 4392094 - 4392160
Alignment:
Q  29 gaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaaaatta 95  Q
    |||| ||||||| ||||| ||||||||| |||||| |||||||||| || ||||||||||| |||||    
T  4392094 gacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaacataatta 4392160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 4490400 - 4490481
Alignment:
Q  3 gaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaa 87  Q
    ||||||||| ||||||||   ||| ||||  |||||| |||||||||||||||| ||||||||||||||||| ||  ||||||||    
T  4490400 gaagaaggcagcggagga---cacgagactcggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 2830460 - 2830419
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  2830460 cctccggtcctatttataagagaattttgggtcaacaaaagt 2830419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 6330240 - 6330199
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6330240 cctccggtcctatttataagagaattttgggtcaacaaaagt 6330199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 8099655 - 8099614
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  8099655 cctccggtcctatttataagagaattttgggtcaacaaaagt 8099614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 8382974 - 8383015
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  8382974 cctccggtcctatttataagagaattttgggtcaacaaaagt 8383015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9644821 - 9644780
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9644821 cctccggtcctatttataagagaattttgggtcaacaaaagt 9644780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9650838 - 9650797
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9650838 cctccggtcctatttataagagaattttgggtcaacaaaagt 9650797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 11572150 - 11572191
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  11572150 cctccggtcctatttataagagaattttgggtcaacaaaagt 11572191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 13853598 - 13853639
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  13853598 cctccggtcctatttataagagaattttgggtcaacaaaagt 13853639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 26602448 - 26602407
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  26602448 cctccggtcctatttataagagaattttgggtcaacaaaagt 26602407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 4568123 - 4568072
Alignment:
Q  23 acactagaccaggtggttgttcatacatgaacttcgacaaagtgattaagga 74  Q
    |||| ||||| |||| || ||||||||||||||| |||||||||||||||||    
T  4568123 acacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 6143677 - 6143638
Alignment:
Q  125 tccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  6143677 tccggttctatttataagagaattttgggacaacaaaagt 6143638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 35031006 - 35031045
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaa 162  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  35031006 cctccggtcctatttataagagaattttgggtcaacaaaa 35031045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 8417809 - 8417839
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  8417809 atttataagagaattttgggtcaacaaaagt 8417839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 28747150 - 28747180
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  28747150 atttataagagaattttgggtcaacaaaagt 28747180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 6068691 - 6068650
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||| ||||||||||||    
T  6068691 cctccggtcctatttataagagaattttgagtcaacaaaagt 6068650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 4622201 - 4622145
Alignment:
Q  34 ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa 90  Q
    ||||||||||||||||  ||||| |||||||| |||||||| ||  |||||||||||    
T  4622201 ggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Complemental strand, 17992102 - 17992074
Alignment:
Q  134 atttataagagaattttgggtcaacaaaa 162  Q
    |||||||||||||||||||||||||||||    
T  17992102 atttataagagaattttgggtcaacaaaa 17992074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 3774 - 3848
Alignment:
Q  16 gaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa 90  Q
    |||||||||||||||||||||||| |||||||||||||| | |||||||| |||||||| || ||||||||||||    
T  3774 gaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4726 - 4815
Alignment:
Q  1 ttgaagaaggcggcggaggagaacactagaccaggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaacaa 90  Q
    |||||||||  ||| ||||||||||| ||  | ||||| ||||||||||||||||| ||||||||||||||||| ||  |||||||||||    
T  4726 ttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
Q  34 ggtggttgttcatacatgaacttcgacaaagtgattaaggaagtgttgcttaaa 87  Q
    ||||||||||||||||||||||| |||||||| |||||||| || |||||||||    
T  3086479 ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 31319404 - 31319445
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  31319404 cctccggttctatttataagagaattttgggtcaacaaaagt 31319445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 1565738 - 1565775
Alignment:
Q  127 cggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1565738 cggttctatttataagagaattttgggtcaacaaaagt 1565775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 1738452 - 1738493
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  1738452 cctccggtcctatttataagagaattttgggtcaacaaaagt 1738493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 7240874 - 7240833
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  7240874 cctccggtcctatttataagagaattttgggtcaacaaaagt 7240833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 7482350 - 7482309
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  7482350 cctccggtcctatttataagagaattttgggtcaacaaaagt 7482309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9268881 - 9268840
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9268881 cctccggtcctatttataagagaattttgggtcaacaaaagt 9268840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 22285824 - 22285783
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  22285824 cctccggtcctatttataagagaattttgggtcaacaaaagt 22285783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 23314144 - 23314185
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  23314144 cctccggtcctatttataagagaattttgggtcaacaaaagt 23314185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 38441585 - 38441544
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  38441585 cctccggtcctatttataagagaattttgggtcaacaaaagt 38441544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 46840985 - 46840944
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  46840985 cctccggtcctatttataagagaattttgggtcaacaaaagt 46840944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 33418500 - 33418460
Alignment:
Q  124 ctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  33418500 ctccggtcctatttataagagaattttgggtcaacaaaagt 33418460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 94334 - 94364
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  94334 atttataagagaattttgggtcaacaaaagt 94364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 36016212 - 36016242
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  36016212 atttataagagaattttgggtcaacaaaagt 36016242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 36583509 - 36583479
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  36583509 atttataagagaattttgggtcaacaaaagt 36583479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 38063929 - 38063959
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  38063929 atttataagagaattttgggtcaacaaaagt 38063959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 4790373 - 4790332
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  4790373 cctccggtcctatttataagagaattttgggtcaataaaagt 4790332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 7579435 - 7579394
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  7579435 cctccggttctatttataagagaattttgggtcaacaaaagt 7579394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 3422185 - 3422144
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  3422185 cctccggtcctatttataagagaattttgggtcaacaaaagt 3422144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6121898 - 6121939
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6121898 cctccggtcctatttataagagaattttgggtcaacaaaagt 6121939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 46797850 - 46797809
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  46797850 cctccggtcctatttataagagaattttgggtcaacaaaagt 46797809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 47833736 - 47833695
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  47833736 cctccggtcctatttataagagaattttgggtcaacaaaagt 47833695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 51894587 - 51894628
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  51894587 cctccggtcctatttataagagaattttgggtcaacaaaagt 51894628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 5987000 - 5986960
Alignment:
Q  124 ctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  5987000 ctccggtcctatttataagagaattttgggtcaacaaaagt 5986960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 3904688 - 3904727
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaa 162  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  3904688 cctccggtcctatttataagagaattttgggtcaacaaaa 3904727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 20538691 - 20538730
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaa 162  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  20538691 cctccggtcctatttataagagaattttgggtcaacaaaa 20538730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 46797730 - 46797773
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagtga 166  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||    
T  46797730 cctccggttctatttataagagaaatttaggtcaacaaaagtga 46797773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 3993090 - 3993060
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  3993090 atttataagagaattttgggtcaacaaaagt 3993060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 24704484 - 24704454
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  24704484 atttataagagaattttgggtcaacaaaagt 24704454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 3372246 - 3372205
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  3372246 cctccggtcctatttataagataattttgggtcaacaaaagt 3372205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 33621921 - 33621880
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  33621921 cctccggtcctatttataagataattttgggtcaacaaaagt 33621880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 41469771 - 41469812
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  41469771 cctccggtcctatttataagagaatttttggtcaacaaaagt 41469812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 42797857 - 42797816
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  42797857 cctccggtcctatttataagagaattttaggtcaacaaaagt 42797816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 43900674 - 43900633
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||| |||||||||    
T  43900674 cctccggtcctatttataagagaattttgggttaacaaaagt 43900633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 47838622 - 47838663
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  47838622 cctccggtcctatttataagagaatttttggtcaacaaaagt 47838663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 48336388 - 48336347
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  48336388 cctccggtcctatttataagaaaattttgggtcaacaaaagt 48336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 53337495 - 53337454
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||| ||||||    
T  53337495 cctccggtcctatttataagagaattttgggtcaataaaagt 53337454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 34042821 - 34042780
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  34042821 cctccggttctatttataagagaattttgggtcaacaaaagt 34042780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 9981772 - 9981731
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9981772 cctccggtcctatttataagagaattttgggtcaacaaaagt 9981731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 11796058 - 11796017
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  11796058 cctccggtcctatttataagagaattttgggtcaacaaaagt 11796017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 12483633 - 12483674
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  12483633 cctccggtcctatttataagagaattttgggtcaacaaaagt 12483674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 14984962 - 14984921
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  14984962 cctccggtcctatttataagagaattttgggtcaacaaaagt 14984921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 25694444 - 25694403
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  25694444 cctccggtcctatttataagagaattttgggtcaacaaaagt 25694403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 27159363 - 27159404
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  27159363 cctccggtcctatttataagagaattttgggtcaacaaaagt 27159404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 31842800 - 31842841
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  31842800 cctccggtcctatttataagagaattttgggtcaacaaaagt 31842841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 39401971 - 39402012
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  39401971 cctccggtcctatttataagagaattttgggtcaacaaaagt 39402012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 44668098 - 44668139
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  44668098 cctccggtcctatttataagagaattttgggtcaacaaaagt 44668139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 47216704 - 47216745
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  47216704 cctccggtactatttataagagaattttgggtcaacaaaagt 47216745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 47777486 - 47777527
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  47777486 cctccggtcctatttataagagaattttgggtcaacaaaagt 47777527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 47588353 - 47588383
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  47588353 atttataagagaattttgggtcaacaaaagt 47588383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 1051013 - 1050972
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  1051013 cctccggtcctatttataagagaattttgggtcaactaaagt 1050972  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 11897179 - 11897138
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  11897179 cctccggtcctatttataagagaaatttgggtcaacaaaagt 11897138  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 26471070 - 26471111
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  26471070 cctccggtcctatttataagagaattttggatcaacaaaagt 26471111  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 44955212 - 44955252
Alignment:
Q  124 ctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  44955212 ctccggtcctatttataagagaattttaggtcaacaaaagt 44955252  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 49630 - 49589
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  49630 cctccggtcctatttataagagaattttgggtcaacaaaagt 49589  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 3055683 - 3055642
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  3055683 cctccggtcctatttataagagaattttgggtcaacaaaagt 3055642  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6648524 - 6648565
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  6648524 cctccggtcctatttataagagaattttgggtcaacaaaagt 6648565  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 9047760 - 9047801
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  9047760 cctccggtcctatttataagagaattttgggtcaacaaaagt 9047801  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 12337942 - 12337983
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  12337942 cctccggtcctatttataagagaattttgggtcaacaaaagt 12337983  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 13197715 - 13197756
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  13197715 cctccggtcctatttataagagaattttgggtcaacaaaagt 13197756  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 15372351 - 15372310
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  15372351 cctccggtcctatttataagagaattttgggtcaacaaaagt 15372310  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 15896967 - 15896926
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  15896967 cctccggtcctatttataagagaattttgggtcaacaaaagt 15896926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 37990018 - 37990059
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  37990018 cctccggtcctatttataagagaattttgggtcaacaaaagt 37990059  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 38917527 - 38917568
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  38917527 cctccggtcctatttataagagaattttgggtcaacaaaagt 38917568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 41478644 - 41478685
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  41478644 cctccggtcctatttataagagaattttgggtcaacaaaagt 41478685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 44398811 - 44398770
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  44398811 cctccggtcctatttataagagaattttgggtcaacaaaagt 44398770  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 16243790 - 16243829
Alignment:
Q  125 tccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  16243790 tccggtcctatttataagagaattttgggtcaacaaaagt 16243829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 44397661 - 44397631
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  44397661 atttataagagaattttgggtcaacaaaagt 44397631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 13344609 - 13344568
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  13344609 cctccggtcctatttataagagaattttggatcaacaaaagt 13344568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 16044322 - 16044363
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  16044322 cctccggtcctatttataagagaattttgggtcaactaaagt 16044363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 30099187 - 30099228
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||| ||||||||||||||||||||||||    
T  30099187 cctccggtcctatttattagagaattttgggtcaacaaaagt 30099228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 37666615 - 37666656
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||||| |||||    
T  37666615 cctccggtcctatttataagagaattttgggtcaactaaagt 37666656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 41492901 - 41492942
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  41492901 cctccggtcctatttataagagaaatttgggtcaacaaaagt 41492942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1707 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1707
Description:

Target: scaffold1707; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 1449 - 1419
Alignment:
Q  134 atttataagagaattttgggtcaacaaaagt 164  Q
    |||||||||||||||||||||||||||||||    
T  1449 atttataagagaattttgggtcaacaaaagt 1419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 12985 - 12944
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | ||||||||||||||||||||||| |||||||    
T  12985 cctccggtcctatttataagagaattttgggtcagcaaaagt 12944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 6136 - 6177
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  6136 cctccggtcctatttataagaaaattttgggtcaacaaaagt 6177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 23910 - 23869
Alignment:
Q  123 cctccggttccatttataagagaattttgggtcaacaaaagt 164  Q
    |||||||| | |||||||||| ||||||||||||||||||||    
T  23910 cctccggtcctatttataagaaaattttgggtcaacaaaagt 23869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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