View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0847_low_8 (Length: 590)
Name: NF0847_low_8
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 364
Target Start/End: Complemental strand, 6179560 - 6179225
Alignment:
| Q |
29 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggnnnnnnnnggtagtatattttagggttatcaatattgtggggcta |
128 |
Q |
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| T |
6179560 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggtttattttggtagtagattttagggttacaaatattgtggggcta |
6179461 |
T |
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| Q |
129 |
gttgcatatggtattattgaaggtgagtagtatctataggacaaacaattcaagttgggaccatgaagggttgttaataattgacgtagagtttgttgaa |
228 |
Q |
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| T |
6179460 |
gttgcatatggtattattgaaggtgactagtatctataggacaaacaattcaagttgggaccatgaaggattgttaataattgacgtagagtttgttgaa |
6179361 |
T |
|
| Q |
229 |
caaaggtgcaagtaacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatttagtaaaaaggacagacata |
328 |
Q |
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| T |
6179360 |
caaaggtgcaagtcacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatatagtaaaaaggacagacata |
6179261 |
T |
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| Q |
329 |
ataggactaatgtttgtttctgttcagtttttaatt |
364 |
Q |
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| T |
6179260 |
ataggactaatgtttgtttctgttcagtttttaatt |
6179225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 444 - 525
Target Start/End: Complemental strand, 6179145 - 6179066
Alignment:
| Q |
444 |
catatcttgaactgaaccaaatttaagtgtgaagtttaaatctgtactttgttttaaaataaaatagtttatttgtactttg |
525 |
Q |
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| T |
6179145 |
catatcttgagttgaaccaaatttaggtgtgaagtttaaatttgtactttg-tttaaaataaaatag-ttatttgtactttg |
6179066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 539 - 579
Target Start/End: Complemental strand, 6179051 - 6179011
Alignment:
| Q |
539 |
gtaaatttcaattatgtttactagttataattataattcat |
579 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||| |
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| T |
6179051 |
gtaaatttgaattatgtttactagttgtaattataattcat |
6179011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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