View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0847_low_9 (Length: 589)
Name: NF0847_low_9
Description: NF0847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0847_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 29 - 363
Target Start/End: Complemental strand, 6179560 - 6179225
Alignment:
| Q |
29 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggnnnnnnn-ggtagtatattttagggttatcaatattgtggggcta |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6179560 |
aatgtgttcgtatatataagtggcaagaaaatgagattgagatagaggttctaggtttattttggtagtagattttagggttacaaatattgtggggcta |
6179461 |
T |
|
| Q |
128 |
gttgcatatggtattattgaaggtgagtagtatctataggacaaacaattcaagttgggaccatgaagggttgttaataattgacgtagagtttgttgaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6179460 |
gttgcatatggtattattgaaggtgactagtatctataggacaaacaattcaagttgggaccatgaaggattgttaataattgacgtagagtttgttgaa |
6179361 |
T |
|
| Q |
228 |
caaaggtgcaagtaacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatttagtaaaaaggacagacata |
327 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6179360 |
caaaggtgcaagtcacaattattgtgtgaagaatttatgatcacaaccatgtggtgaaaatggtcaaacactcactcatatagtaaaaaggacagacata |
6179261 |
T |
|
| Q |
328 |
ataggactaatgtttgtttctgttcagtttttaatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6179260 |
ataggactaatgtttgtttctgttcagtttttaatt |
6179225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 443 - 524
Target Start/End: Complemental strand, 6179145 - 6179066
Alignment:
| Q |
443 |
catatcttgaactgaaccaaatttaagtgtgaagtttaaatctgtactttgttttaaaataaaatagtttatttgtactttg |
524 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
6179145 |
catatcttgagttgaaccaaatttaggtgtgaagtttaaatttgtactttg-tttaaaataaaatag-ttatttgtactttg |
6179066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 538 - 578
Target Start/End: Complemental strand, 6179051 - 6179011
Alignment:
| Q |
538 |
gtaaatttcaattatgtttactagttataattataattcat |
578 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
6179051 |
gtaaatttgaattatgtttactagttgtaattataattcat |
6179011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 782 times since January 2019
Visitors: 6131