View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_high_1 (Length: 559)
Name: NF0848_high_1
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 15702574 - 15703009
Alignment:
| Q |
9 |
agcagagagacaacctgttgagaacagatgaggttttgtggaggcagagaagtatggcagtatggttgaaggatggtgatagaaatacaaaaattttcca |
108 |
Q |
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| T |
15702574 |
agcagagagacaacctgttgagaacagataaggttttgtggaggcagaggagtagggcagtatggttgaaggatggggatagaaatacaaaaattttcca |
15702673 |
T |
|
| Q |
109 |
tagcaaggccgaccagaggaggaaagcaaatgcaattaagaaactgaaagatgtcgacggagtgtggtggaaaggtgatgaccatctagaaagactctta |
208 |
Q |
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| T |
15702674 |
tagcaaggccgaccagaggaggaaaacaaatgcaattaagaaactgaaagatgtcttcggagtgtggtggaaaggtgatgaccatctagaaagactctta |
15702773 |
T |
|
| Q |
209 |
acctcttatttctctgatattttcactacttcctctccatcaaatattgaagaagaatgtgaaactgtcaaaggaaagttaactccgaaacacgcagacc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| | |
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| T |
15702774 |
acctcttatttctctgatattttcactacttcctctccatccaatattgaagaagtatgtgaaactatcaaaggaaagttaactccggaacacgcagatc |
15702873 |
T |
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| Q |
309 |
ggtgtggagctgcattcacagataaagaaatagaagatgccatatttcatatgcaccccttaaagggaccaggcccggatggattacctgcgcttttctt |
408 |
Q |
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||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
15702874 |
ggtgttgagctgtattcacagataaagaattagaagatgccatatttcagatgcaccccttaaaggcaccaggcccggatggattgcctgcgcttttctt |
15702973 |
T |
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| Q |
409 |
tcagaagttttgccatatagttggtagggatgtgaa |
444 |
Q |
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| T |
15702974 |
ttagaagttttggcatatagttggtagggatgtgaa |
15703009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 23378347 - 23378379
Alignment:
| Q |
77 |
aaggatggtgatagaaatacaaaaattttccat |
109 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
23378347 |
aaggatggtgatagaaatacaaaaaatttccat |
23378379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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