View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0848_high_10 (Length: 336)

Name: NF0848_high_10
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0848_high_10
NF0848_high_10
[»] scaffold0026 (1 HSPs)
scaffold0026 (83-336)||(12620-12872)
[»] scaffold0634 (1 HSPs)
scaffold0634 (83-336)||(2747-2999)
[»] chr3 (7 HSPs)
chr3 (87-300)||(18914193-18914405)
chr3 (84-333)||(41455893-41456142)
chr3 (152-209)||(18136117-18136174)
chr3 (152-205)||(18129607-18129660)
chr3 (87-143)||(18136249-18136306)
chr3 (157-261)||(9533232-9533335)
chr3 (87-142)||(18129736-18129792)
[»] chr2 (5 HSPs)
chr2 (83-329)||(23169046-23169294)
chr2 (83-329)||(23580303-23580551)
chr2 (83-332)||(26582856-26583109)
chr2 (194-282)||(23062869-23062956)
chr2 (194-282)||(23264301-23264388)
[»] scaffold0249 (2 HSPs)
scaffold0249 (152-303)||(7517-7667)
scaffold0249 (87-143)||(7742-7798)
[»] chr6 (7 HSPs)
chr6 (83-336)||(29614935-29615195)
chr6 (84-200)||(19786751-19786866)
chr6 (84-200)||(12167420-12167535)
chr6 (84-200)||(19877513-19877628)
chr6 (84-200)||(19883289-19883404)
chr6 (168-329)||(25396343-25396503)
chr6 (84-200)||(19286329-19286444)
[»] scaffold0029 (1 HSPs)
scaffold0029 (83-335)||(110939-111198)
[»] scaffold1773 (2 HSPs)
scaffold1773 (83-200)||(153-269)
scaffold1773 (215-333)||(324-442)
[»] chr8 (7 HSPs)
chr8 (83-200)||(19902808-19902924)
chr8 (83-200)||(23865615-23865732)
chr8 (154-209)||(19987990-19988045)
chr8 (158-208)||(20005423-20005473)
chr8 (87-136)||(20005563-20005612)
chr8 (84-175)||(17053780-17053870)
chr8 (194-282)||(18613409-18613496)
[»] chr7 (8 HSPs)
chr7 (83-200)||(12710780-12710896)
chr7 (83-200)||(13123851-13123967)
chr7 (83-200)||(13742686-13742803)
chr7 (84-200)||(13006489-13006604)
chr7 (157-248)||(18607248-18607339)
chr7 (157-261)||(147453-147556)
chr7 (157-211)||(16475929-16475983)
chr7 (152-196)||(13318007-13318051)
[»] scaffold0456 (2 HSPs)
scaffold0456 (255-329)||(241-315)
scaffold0456 (255-329)||(7386-7460)
[»] scaffold0117 (1 HSPs)
scaffold0117 (83-200)||(9512-9628)
[»] chr4 (4 HSPs)
chr4 (83-333)||(8046626-8046893)
chr4 (152-209)||(14555881-14555938)
chr4 (160-261)||(18212523-18212623)
chr4 (291-327)||(14485975-14486010)
[»] chr1 (6 HSPs)
chr1 (152-209)||(20941657-20941714)
chr1 (84-200)||(41110997-41111112)
chr1 (157-261)||(20438224-20438327)
chr1 (87-142)||(23631145-23631200)
chr1 (194-247)||(11157328-11157381)
chr1 (87-143)||(20941789-20941846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (83-200)||(174440-174557)
[»] scaffold0348 (2 HSPs)
scaffold0348 (152-209)||(1527-1584)
scaffold0348 (87-143)||(1659-1716)
[»] chr5 (4 HSPs)
chr5 (152-209)||(22232436-22232493)
chr5 (84-200)||(23527632-23527747)
chr5 (194-261)||(23112480-23112546)
chr5 (87-143)||(22232568-22232625)
[»] scaffold0077 (2 HSPs)
scaffold0077 (152-204)||(17972-18024)
scaffold0077 (152-204)||(23605-23657)
[»] scaffold0053 (1 HSPs)
scaffold0053 (196-329)||(81950-82082)
[»] scaffold0028 (2 HSPs)
scaffold0028 (169-301)||(65265-65397)
scaffold0028 (215-277)||(1274-1336)
[»] scaffold0004 (1 HSPs)
scaffold0004 (194-282)||(116052-116139)
[»] scaffold0337 (1 HSPs)
scaffold0337 (157-261)||(9950-10053)
[»] scaffold0139 (1 HSPs)
scaffold0139 (194-282)||(15769-15856)
[»] scaffold0020 (1 HSPs)
scaffold0020 (194-282)||(102700-102787)
[»] scaffold1427 (1 HSPs)
scaffold1427 (194-261)||(1207-1273)
[»] scaffold1061 (1 HSPs)
scaffold1061 (215-282)||(1607-1674)
[»] scaffold0106 (2 HSPs)
scaffold0106 (87-149)||(46685-46748)
scaffold0106 (87-149)||(50958-51021)


Alignment Details
Target: scaffold0026 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 83 - 336
Target Start/End: Complemental strand, 12872 - 12620
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  12872 aacctgtgtatatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataa 12773  T
Q  183 ttatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  12772 ttatgcgcatacatcaatttcattcaat-agttatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccg 12674  T
Q  283 gcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaa 336  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12673 gcttgttctagtaggattctgatacctatacaagggatatacaagttaaaggaa 12620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 83 - 336
Target Start/End: Original strand, 2747 - 2999
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||||||| || | | |||||||||||||||| ||||||| |||||    
T  2747 aacctgtgtatatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaact-caaacaatccagaacatagacaattatttata 2845  T
Q  182 attatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacc 281  Q
    ||||||| |||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  2846 attatgcgcatacatcaaattcattcaataa-ttatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcacc 2944  T
Q  282 agcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaa 336  Q
     |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  2945 ggcttgttctagtgggattctggtacctatacaagggttatacaagttaaaggaa 2999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 87 - 300
Target Start/End: Original strand, 18914193 - 18914405
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattat 186  Q
    ||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||| || ||| |||||||||||||||||||||||||||||||||||    
T  18914193 tgtgtatatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaa-ttccaacaatccagaacatacacaattaattataattat 18914291  T
Q  187 gcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagctt 286  Q
    || |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||  |    
T  18914292 gctcatacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaactaattccatcaatagagt 18914391  T
Q  287 gttctagtaggatt 300  Q
    ||| ||||||||||    
T  18914392 gttttagtaggatt 18914405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 84 - 333
Target Start/End: Complemental strand, 41456142 - 41455893
Alignment:
Q  84 acctgtgtatatctacatacaacttaactaca-catatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    |||||||||||||||||||||||| |||||   ||||| |||||||||||||||||||||| || | | |||||| |||||||| |||||||| ||||||    
T  41456142 acctgtgtatatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaact-caaacaattcagaacattcacaattatttataa 41456044  T
Q  183 ttatgcacatacatcaatttcattcaataaattatatattcacttgat-ttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacc 281  Q
    |||||| | ||||||||||||||||||||  || ||||||||||| || ||| |||||||| ||||| || ||| ||||||| ||| |||||||||  ||    
T  41456043 ttatgcgcttacatcaatttcattcaatag-ttgtatattcacttaatcttcctactcaattatctccaacatttactaacaccaatcaattcgattgcc 41455945  T
Q  282 agcttgttctagtaggattctgatacctatacaagggttatacaagttaaag 333  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  41455944 agcttgttctagtaggattctgatacctatactaggattatacaagttaaag 41455893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 18136174 - 18136117
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18136174 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 18129660 - 18129607
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcat 205  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  18129660 aacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 18136306 - 18136249
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 143  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  18136306 tgtgtatatctacatacaacttaaccatgcatatgttttcatatgacttacaactccg 18136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 9533232 - 9533335
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 256  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||  |||||||||||||||||||  ||||||    
T  9533232 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttagtttcatactcaatcatctc-caaattc 9533330  T
Q  257 actaa 261  Q
    |||||    
T  9533331 actaa 9533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 18129792 - 18129736
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacata-tatttcatatgacttactactcc 142  Q
    ||||||||||||||||||||||||| |  |||| | ||||||||||||||| |||||    
T  18129792 tgtgtatatctacatacaacttaaccatgcatattttttcatatgacttacaactcc 18129736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 329
Target Start/End: Complemental strand, 23169294 - 23169046
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||| ||||||||| ||||||||||  ||||  ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||    
T  23169294 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttata 23169196  T
Q  182 attatgcacatacatcaatttcattcaataaattatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatca 279  Q
    ||||||| ||||||||| |  ||||| | |  ||||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  23169195 attatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatca 23169096  T
Q  280 ccagcttgttctagtaggattctgatacctatacaagggttatacaagtt 329  Q
    ||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  23169095 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagtt 23169046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 83 - 329
Target Start/End: Complemental strand, 23580551 - 23580303
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||| ||||||||| ||||||||||  ||||  ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||    
T  23580551 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttata 23580453  T
Q  182 attatgcacatacatcaatttcattcaataaattatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatca 279  Q
    ||||||| ||||||||| |  ||||| | |  ||||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||    
T  23580452 attatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatca 23580353  T
Q  280 ccagcttgttctagtaggattctgatacctatacaagggttatacaagtt 329  Q
    ||||  |||||||||||||| || ||||||||||||||||||||||||||    
T  23580352 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagtt 23580303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 83 - 332
Target Start/End: Original strand, 26582856 - 26583109
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||| || | | |||||||||||||||||||||||| |||||    
T  26582856 aacctgtgtatatctacatacaacttaactattacatatgttttatatgacttactactccgcaact-caaacaatccagaacatacacaattatttata 26582954  T
Q  182 attatgcacatacatcaatttcattcaa----taaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 277  Q
    ||||||| |||||||||||  ||||| |    | |  |||||||||||| ||||||||||||||||||||| || ||| ||||||| ||| |||||||||    
T  26582955 attatgcgcatacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaattcgat 26583054  T
Q  278 caccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaa 332  Q
    |||| ||| |||||| ||||| || | |||||| || |||||||||| |||||||    
T  26583055 caccggctagttctaataggagtcggttacctacaccagggttatactagttaaa 26583109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 23062869 - 23062956
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||| | | ||||| |||||| | |||||||||||||||||||  |||||||||||  ||||| |||||||| ||||    
T  23062869 catcaagttcattcaacatagtatatgttcactaggtttcatactcaatcatctc-caaattcactaaactcaactaattcgattacca 23062956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 23264301 - 23264388
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||| |||||||| ||| ||||||||  ||||| |||||||| ||||    
T  23264301 catcaagttcattcaacatagtatatgttcacttggtttcatactcgatcatctccaaa-ttcactaaactcaactaattcgattacca 23264388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 7667 - 7517
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaa 251  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||    
T  7667 aacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctccaa 7568  T
Q  252 aattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctg 303  Q
    ||||||||||| ||||| |||||||||||| |  | || |||||||||||||    
T  7567 aattcactaac-tcaactaattcgatcaccggagtattttagtaggattctg 7517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 7798 - 7742
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactccg 143  Q
    ||||||||||||||||||||||||| |  ||||| ||||||||||||| | ||||||    
T  7798 tgtgtatatctacatacaacttaacaatgcatatgtttcatatgacttgcaactccg 7742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 83 - 336
Target Start/End: Complemental strand, 29615195 - 29614935
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||||||||||||||||||||||||  ||||  |||||| |||||||||||||||| ||||| || |   |||||||||||||||||||||||| |||||    
T  29615195 aacctgtgtatatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc--aacaatccagaacatacacaattatttata 29615098  T
Q  182 attatgcacatacatcaatttcattcaataaattat--------atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaatt 273  Q
    ||||| |||||||||||||  ||||| | |  ||||        ||||||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||    
T  29615097 attattcacatacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaatt 29614998  T
Q  274 cgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaa 336  Q
    | |||||| ||| |||||| || ||||||| ||||||| | |||||||||| |||||||||||    
T  29614997 caatcaccggctcgttctaataagattctgttacctatgccagggttatactagttaaaggaa 29614935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 19786866 - 19786751
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  ||||| |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19786866 acctgtgtatatctacatacaactcgactactacatatgtatcatatgacttactactcc-ataactcaaacaatccaga-cttacacaattatttataa 19786769  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  19786768 ttatgcacatacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 12167420 - 12167535
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  12167420 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 12167517  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  12167518 ttatgcacatacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 19877513 - 19877628
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19877513 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19877610  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  19877611 ttatgcacatacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 19883289 - 19883404
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19883289 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19883386  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  19883387 ttatgcacatacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 329
Target Start/End: Original strand, 25396343 - 25396503
Alignment:
Q  168 cacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaa 267  Q
    |||||||||| ||||| || |  || |||||| |||||||||   | |||||||||||||| |||||||||||||||| || ||||||||||||  ||||    
T  25396343 cacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaattcaa 25396442  T
Q  268 ccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagtt 329  Q
    |||||||||| ||||   ||||  |||||||||| | | | |||||||||||||||||||||    
T  25396443 ccaattcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagtt 25396503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 19286329 - 19286444
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  19286329 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 19286426  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  19286427 ttatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 83 - 335
Target Start/End: Original strand, 110939 - 111198
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| | || || | ||||||||||| |||||||||| |||||    
T  110939 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactcc-acaactcga-caatccagaacctacacaattatttata 111036  T
Q  182 attatgcacatacatcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaatt 273  Q
    |||| ||||||||||||||  ||||| | |  ||||||||        ||||||| |||||||| |||||||||| || ||| ||||||| ||| ||||     
T  111037 attacgcacatacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatc 111136  T
Q  274 cgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaagga 335  Q
    | |||||| |||||||||| |||||||| | |||||| || |||||||||| ||||||||||    
T  111137 caatcaccggcttgttctaataggattcagttacctacaccagggttatactagttaaagga 111198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 153 - 269
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||| |||||    
T  153 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactcc-acagctc-aacaatccagaacatacacaattatttata 250  T
Q  182 attatgcacatacatcaat 200  Q
    |||||||||| ||||||||    
T  251 attatgcacacacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 324 - 442
Alignment:
Q  215 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 314  Q
    |||||||||||||| |||||||| | |||||||| || ||| ||||||| ||| |||| | |||||  |||||||||| |||||||| | |||||| ||     
T  324 tatatattcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacacc 423  T
Q  315 agggttatacaagttaaag 333  Q
    | |||||||| ||||||||    
T  424 aaggttatactagttaaag 442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 19902924 - 19902808
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||  ||||||||||||||||||||||| |||||    
T  19902924 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactc-gacaatccagaacatacacaattatttata 19902827  T
Q  182 attatgcacatacatcaat 200  Q
    || ||||||||||||||||    
T  19902826 atcatgcacatacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 23865615 - 23865732
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactaca-catatatttcatat-gacttactactccgaaaattctaacaatccagaacatacacaattaattat 180  Q
    ||||||||||||||||||||||||| |||||   |||||||||||||| |||||||||||||| || |   |||||| ||||||||||||||||| ||||    
T  23865615 aacctgtgtatatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc--aacaattcagaacatacacaattatttat 23865712  T
Q  181 aattatgcacatacatcaat 200  Q
    ||||||||||||||||||||    
T  23865713 aattatgcacatacatcaat 23865732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 19988045 - 19987990
Alignment:
Q  154 caatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19988045 caatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 20005473 - 20005423
Alignment:
Q  158 ccagaacatacacaattaattataattatgcacatacatcaatttcattca 208  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  20005473 ccagaaaatacacaatcaatcataatcatgcacatacatcaagttcattca 20005423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 20005612 - 20005563
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatatttcatatgacttac 136  Q
    ||||||||||||||||||||||||| |  ||||||| | |||||||||||    
T  20005612 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttac 20005563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 17053780 - 17053870
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaatta 175  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||| ||||||||| | || || |||||||||| || ||||||||||    
T  17053780 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacatactactcc-acaactcaaacaatccag-acttacacaatta 17053870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 18613409 - 18613496
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| |||||||||   | ||||| ||||| || |||||||||||||||||||  |||||||||||  ||||| |||||||| ||||    
T  18613409 catcaagttcattcaacgtagtatatgttcacatggtttcatactcaatcatctc-caaattcactaaactcaactaattcgattacca 18613496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 12710896 - 12710780
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||  ||||| ||||||||||||||||| |||||    
T  12710896 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-ataactc-gacaattcagaacatacacaattatttata 12710799  T
Q  182 attatgcacatacatcaat 200  Q
    |||||||||||||||||||    
T  12710798 attatgcacatacatcaat 12710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 13123967 - 13123851
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||  ||||| ||||||||||||||||| |||||    
T  13123967 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactc-gacaattcagaacatacacaattatttata 13123870  T
Q  182 attatgcacatacatcaat 200  Q
    |||||||||||||||||||    
T  13123869 attatgcacatacatcaat 13123851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 13742686 - 13742803
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||||||||||||| ||||||||||  ||||  |||||| ||||||||||||||||||||| | || || |||||||||||||||||||||||| |||||    
T  13742686 aacctgtgtatatcaacatacaactcgactattacatatgtttcatatgacttactactcc-acaactcaaacaatccagaacatacacaattatttata 13742784  T
Q  182 attatgcacatacatcaat 200  Q
    ||||||| |||||||||||    
T  13742785 attatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 13006489 - 13006604
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  13006489 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 13006586  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  13006587 ttatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 18607248 - 18607339
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctc 248  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||    
T  18607248 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc 18607339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 147453 - 147556
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 256  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | || || |||||||| |||||||||||||||||||  ||||||    
T  147453 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtacatgttcacttggtttcatactcaatcatctc-caaattc 147551  T
Q  257 actaa 261  Q
    |||||    
T  147552 actaa 147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 16475983 - 16475929
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaata 211  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| | |||||||||||    
T  16475983 tccagaaaatacacaattaatcataatcatgctcatacatcgagttcattcaata 16475929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 13318007 - 13318051
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacat 196  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||    
T  13318007 aacaatccagaaattacacaattaatcataattatgcgcatacat 13318051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 241 - 315
Alignment:
Q  255 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagtt 329  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  241 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagtt 315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 7386 - 7460
Alignment:
Q  255 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagtt 329  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||    
T  7386 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagtt 7460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 9628 - 9512
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || ||  ||||||||||||||| ||||||| |||||    
T  9628 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactc-gacaatccagaacatatacaattatttata 9531  T
Q  182 attatgcacatacatcaat 200  Q
    || ||||||||||||||||    
T  9530 atcatgcacatacatcaat 9512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 333
Target Start/End: Complemental strand, 8046893 - 8046626
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    |||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||| | || || |  |||||| | |||||||||||| |||||    
T  8046893 aacctgtgtatatctacatacaactcgactattacatatatttcatatgacttactactcc-acaactc-agtaatccaaatcatacacaattatttata 8046796  T
Q  182 attatgcacatacatcaatttcattcaa-----------------taaat-tatatattcacttgatttcatactcaatcatctcaaaaattcactaaca 263  Q
    |||||||||| ||||||||  ||||| |                 || || |||||||||||||| |||||||| |||||||||| || ||| |||||||    
T  8046795 attatgcacacacatcaatcacattccacatgttatatatatatatatatatatatattcacttgttttcatacacaatcatctccaacatttactaaca 8046696  T
Q  264 tcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaag 333  Q
     ||| |||| | ||| || |||||||||| |||||||| | |||||| || |||||||||| ||||||||    
T  8046695 ccaatcaatccaatcgccggcttgttctaataggattcggttacctacaccagggttatactagttaaag 8046626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 14555938 - 14555881
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  14555938 aacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 18212523 - 18212623
Alignment:
Q  160 agaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcact 259  Q
    |||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||    
T  18212523 agaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcact 18212621  T
Q  260 aa 261  Q
    ||    
T  18212622 aa 18212623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 14485975 - 14486010
Alignment:
Q  291 tagtaggattctgatacctatacaagggttatacaag 327  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14485975 tagtaggatt-tgatacctatacaagggttatacaag 14486010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 20941714 - 20941657
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20941714 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 41110997 - 41111112
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||    
T  41110997 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataa 41111094  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  41111095 ttatgcacatacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 20438327 - 20438224
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 256  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  20438327 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 20438229  T
Q  257 actaa 261  Q
    |||||    
T  20438228 actaa 20438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 23631145 - 23631200
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatatttcatatgacttactactcc 142  Q
    ||||||||||||||||||||||||| |  ||||||| | ||||||||||| |||||    
T  23631145 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaactcc 23631200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 11157328 - 11157381
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatct 247  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||    
T  11157328 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatct 11157381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 20941846 - 20941789
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 143  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  20941846 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaactccg 20941789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 174557 - 174440
Alignment:
Q  83 aacctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattata 181  Q
    ||||| ||||| ||||||||||| |  ||||  |||||| ||||| |||||||||| ||||| || | | |||||||||||||||||||||||| |||||    
T  174557 aacctttgtatctctacatacaattcgactattacatatttttcaaatgacttactgctccgcaact-caaacaatccagaacatacacaattatttata 174459  T
Q  182 attatgcacatacatcaat 200  Q
    |||||||||||||||||||    
T  174458 attatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 1584 - 1527
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1584 aacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 1716 - 1659
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 143  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  1716 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaactccg 1659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 22232493 - 22232436
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 209  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22232493 aacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 23527632 - 23527747
Alignment:
Q  84 acctgtgtatatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataa 182  Q
    ||||||||||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || || ||||||| ||  ||||||||| ||||||    
T  23527632 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaataatccag-actgacacaattatttataa 23527729  T
Q  183 ttatgcacatacatcaat 200  Q
    ||||||||||||||||||    
T  23527730 ttatgcacatacatcaat 23527747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 23112546 - 23112480
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 261  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  23112546 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 23112480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 22232625 - 22232568
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatat-atttcatatgacttactactccg 143  Q
    ||||||||||||||||||||||||| |  |||||  ||||||||||||||| ||||||    
T  22232625 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacgactccg 22232568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 18024 - 17972
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18024 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 23657 - 23605
Alignment:
Q  152 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23657 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 82082 - 81950
Alignment:
Q  196 tcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagta 295  Q
    |||| ||||||||| | | |||||||||||||| |||||||||||| ||| || ||||||||||||  |||||||||||||  ||||   ||||  ||||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaattcgactaccaatgtgtttaagta 81983  T
Q  296 ggattctgatacctatacaagggttatacaagtt 329  Q
    |||||| | | | |||||||||||||||||||||    
T  81982 ggattcag-tgcatatacaagggttatacaagtt 81950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 65265 - 65397
Alignment:
Q  169 acaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaac 268  Q
    ||||||||| ||||| || |  || |||||| ||||||||| | | |||||||||||||| |||||||||||||||  || ||||||||||||  | |||    
T  65265 acaattaataataatcatactaatgcatcaagttcattcaacatagtatatattcacttggtttcatactcaatcaaatccaaaattcactaaacttaac 65364  T
Q  269 caattcgatcaccagcttgttctagtaggattc 301  Q
    ||||||||| ||||   |||| |||||||||||    
T  65365 caattcgattaccaatgtgttttagtaggattc 65397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 277
Target Start/End: Original strand, 1274 - 1336
Alignment:
Q  215 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 277  Q
    ||||| |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||||    
T  1274 tatatgttcacttggtttcatactcaatcatatccaaaactcactaaattcaaccaattcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 116052 - 116139
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||| ||||    
T  116052 catcaagttcattcaacatagtatatgttcacttgatttcatactcaatcatctc-aaaattcactaaactcaactaattcgattacca 116139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 10053 - 9950
Alignment:
Q  157 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 256  Q
    ||||||| ||||||||||||||||||| |  |  || |||||| |||||| || | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  10053 tccagaaaatacacaattaattataatcaaactaatgcatcaagttcattaaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 9955  T
Q  257 actaa 261  Q
    |||||    
T  9954 actaa 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 15856 - 15769
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||  ||||| |||||||| ||||    
T  15856 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaaactcaactaattcgattacca 15769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 102787 - 102700
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  ||||| |||||  ||||| |||||||| ||||    
T  102787 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaatttactaaactcaactaattcgattacca 102700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 1207 - 1273
Alignment:
Q  194 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 261  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  1207 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 1607 - 1674
Alignment:
Q  215 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 282  Q
    |||||||||||||| ||||||||||| | || || ||||||||||||  |||||||| ||||| ||||    
T  1607 tatatattcacttggtttcatactcactgatatccaaaattcactaaattcaaccaactcgattacca 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 46748 - 46685
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatat-ttcatatgacttactactccgaaaatt 149  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||||| |||||| |||||    
T  46748 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaactccgcaaatt 46685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 51021 - 50958
Alignment:
Q  87 tgtgtatatctacatacaacttaactacacatatat-ttcatatgacttactactccgaaaatt 149  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||||| |||||| |||||    
T  51021 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaactccgcaaatt 50958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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