View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0848_high_12 (Length: 324)
Name: NF0848_high_12
Description: NF0848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0848_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 2128026 - 2128314
Alignment:
| Q |
30 |
aatagaatcagttttggtgaagcttaaacaacatagctttctctagggcactcatacaaagaaggtccaaaatcaagctctaaggc--gtgttaactcaa |
127 |
Q |
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| T |
2128026 |
aatagaatcagttttggtgaagcttaaacaacatagctttctctagggcactcatacaaagaaggtccaaaatcacgctctaaggctcgtgttaaatcaa |
2128125 |
T |
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| Q |
128 |
gccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggataaggaggaacaaccctctaatgattaatccaaatgtattgttaatgtatgta |
227 |
Q |
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| T |
2128126 |
gccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggataaggaggaacaaccctctaatgataaatccaaatgtattgttaatgtatgta |
2128225 |
T |
|
| Q |
228 |
tcttaatgataaataggtacatacattaacaaccctagggctacattgtactttagggcactttcaatttgtttccttacatattgttg |
316 |
Q |
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| T |
2128226 |
tcttaatgataaataggtacatacattaacaaccctagggctacattgtactttagggcactttcaatttgtttccttacattttgttg |
2128314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 2137325 - 2137492
Alignment:
| Q |
30 |
aatagaatcagttttggtgaagcttaaacaacatagctttctctagggcactcatacaaagaaggtccaaaatcaagctctaaggc--gtgttaactcaa |
127 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| ||||||| |||| |
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| T |
2137325 |
aatagaaccagttttggtgaagcttaaacaacatagctttctctaaggcactcatacacagaaggtccaaaatcacgctctaaggctcgtgttaaatcaa |
2137424 |
T |
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| Q |
128 |
gccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggataaggaggaacaaccctctaa |
195 |
Q |
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| T |
2137425 |
gccatgaatgaaacgggtgggacgtttgcatcatttggaaccaaggacaaggaggaacaaccctctaa |
2137492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 2081273 - 2081176
Alignment:
| Q |
80 |
ctcatacaaagaaggtccaaaatcaagctctaagg--cgtgttaactcaagccatgaatgaaacgggtgggac-gtttgcatcatttggaaccaagga |
174 |
Q |
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|||||||| |||||||||||||||||||||||| | ||||| || ||| || | ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
2081273 |
ctcatacacagaaggtccaaaatcaagctctaacgctcgtgtaaaatcacgctgttaatgaaatgggtgggacattttgcatcatttggaaccaagga |
2081176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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